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Report for CCDS12486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12486.1 Public Homo sapiens 19 CLIP3 24 110 108 CCDS HistoryNCBI Gene:25999Re-query CCDS DB by CCDS ID:12486.1Re-query CCDS DB by GeneID:25999See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360535.9 ENSP00000353732.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000360535.9Link to Ensembl Protein Viewer:ENSP00000353732.3Re-query CCDS DB by Nucleotide ID:ENST00000360535Re-query CCDS DB by Protein ID:ENSP00000353732
Original member Current member EBI ENST00000593074.5 ENSP00000466832.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000593074.5Link to Ensembl Protein Viewer:ENSP00000466832.1Re-query CCDS DB by Nucleotide ID:ENST00000593074Re-query CCDS DB by Protein ID:ENSP00000466832
Original member Current member NCBI NM_001199570.2 NP_001186499.1 Accepted alive Link to Nucleotide Sequence:NM_001199570.2Link to Protein Sequence:NP_001186499.1Re-query CCDS DB by Nucleotide ID:NM_001199570Re-query CCDS DB by Protein ID:NP_001186499Link to BLAST:NP_001186499.1
Original member Current member NCBI NM_015526.3 NP_056341.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015526.3Link to Protein Sequence:NP_056341.1Re-query CCDS DB by Nucleotide ID:NM_015526Re-query CCDS DB by Protein ID:NP_056341Link to BLAST:NP_056341.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186499.1 547 Q96DZ5 547 100% 0 0
NP_056341.1 547 Q96DZ5 547 100% 0 0

Chromosomal Locations for CCDS 12486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36016158 36016212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36016907 36016979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36017386 36017450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36017655 36017778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36017848 36017991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36018898 36019026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36019171 36019306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36024396 36024632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36026147 36026265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36026586 36026747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36026952 36027045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36027132 36027271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36032192 36032357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1644 nt):
ATGACTAAGACAGATCCTGCCCCGATGGCCCCGCCACCCCGAGGAGAGGAGGAAGAAGAGGAGGAGGAGG
ATGAACCCGTCCCCGAGGCCCCCAGCCCCACCCAGGAGCGCCGGCAGAAGCCTGTTGTGCACCCCTCGGC
ACCTGCCCCCCTCCCTAAGGACTACGCTTTCACCTTCTTCGATCCCAATGACCCGGCGTGCCAGGAGATC
CTGTTTGACCCTCAGACCACCATCCCCGAGCTGTTTGCCATTGTGCGCCAGTGGGTGCCCCAAGTCCAGC
ACAAGATAGACGTCATCGGCAATGAGATTCTGCGCCGAGGCTGCCATGTGAACGATCGTGACGGGCTGAC
CGACATGACACTGCTCCACTATGCGTGCAAAGCTGGGGCCCACGGAGTCGGGGACCCCGCGGCAGCCGTG
CGCCTCTCGCAGCAGCTGCTGGCGCTGGGCGCAGATGTGACGCTGCGCAGCCGCTGGACCAACATGAACG
CGCTTCACTACGCGGCCTATTTTGATGTGCCCGACCTCGTGCGTGTGCTGCTGAAGGGTGCGAGGCCGCG
AGTGGTGAACTCCACGTGCAGTGACTTCAACCACGGCTCAGCCCTGCACATCGCTGCTTCCAGCCTGTGC
CTGGGCGCCGCCAAATGTTTGCTGGAGCACGGCGCCAACCCTGCGCTGAGGAATCGAAAAGGACAGGTGC
CGGCGGAGGTGGTCCCAGATCCTATGGACATGTCCCTGGACAAGGCAGAGGCGGCACTGGTGGCCAAGGA
GCTGCGGACGCTTCTGGAAGAGGCAGTGCCACTATCTTGCGCCCTCCCCAAGGTCACGCTACCCAACTAT
GACAACGTCCCAGGCAATCTCATGCTTAGCGCACTGGGCTTGCGCCTGGGAGACCGCGTGCTGCTGGATG
GCCAGAAGACGGGCACACTGCGGTTCTGTGGGACCACGGAGTTTGCCAGCGGCCAGTGGGTGGGCGTGGA
GCTGGACGAACCTGAGGGCAAGAACGATGGCAGCGTTGGGGGCGTTCGGTACTTCATCTGCCCTCCCAAG
CAGGGTCTCTTTGCCTCCGTGTCCAAGATCTCCAAGGCAGTGGACGCACCCCCCTCCTCTGTCACCTCCA
CACCCCGGACCCCCCGGATGGACTTCTCCCGTGTCACCGGCAAAGGCCGCAGGGAACACAAAGGCAAGAA
GAAGACCCCATCATCCCCATCTCTGGGCAGCTTGCAGCAGCGTGACGGGGCCAAGGCTGAGGTTGGAGAC
CAGGTCCTTGTCGCGGGCCAGAAGCAGGGGATCGTGCGCTTCTACGGGAAGACAGACTTTGCCCCAGGTT
ACTGGTATGGCATTGAGCTGGACCAGCCCACAGGCAAGCATGATGGCTCTGTCTTCGGTGTCCGGTACTT
CACTTGCCCCCCGAGGCATGGGGTCTTCGCACCAGCATCCCGTATTCAGAGGATTGGCGGATCCACTGAT
TCCCCCGGGGACAGCGTTGGAGCCAAAAAAGTGCATCAAGTGACAATGACGCAGCCCAAACGCACCTTCA
CCACAGTCCGGACCCCAAAGGACATTGCATCAGAGAACTCCATTTCCAGGTTGCTGTTCTGCTGCTGGTT
CCCCTGGATGCTGAGGGCGGAGATGCAGTCTTAG

Translation (547 aa):
MTKTDPAPMAPPPRGEEEEEEEEDEPVPEAPSPTQERRQKPVVHPSAPAPLPKDYAFTFFDPNDPACQEI
LFDPQTTIPELFAIVRQWVPQVQHKIDVIGNEILRRGCHVNDRDGLTDMTLLHYACKAGAHGVGDPAAAV
RLSQQLLALGADVTLRSRWTNMNALHYAAYFDVPDLVRVLLKGARPRVVNSTCSDFNHGSALHIAASSLC
LGAAKCLLEHGANPALRNRKGQVPAEVVPDPMDMSLDKAEAALVAKELRTLLEEAVPLSCALPKVTLPNY
DNVPGNLMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPK
QGLFASVSKISKAVDAPPSSVTSTPRTPRMDFSRVTGKGRREHKGKKKTPSSPSLGSLQQRDGAKAEVGD
QVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCPPRHGVFAPASRIQRIGGSTD
SPGDSVGAKKVHQVTMTQPKRTFTTVRTPKDIASENSISRLLFCCWFPWMLRAEMQS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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