NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8308.1 Public Homo sapiens 11 JRKL 24 110 108 CCDS HistoryNCBI Gene:8690Re-query CCDS DB by CCDS ID:8308.1Re-query CCDS DB by GeneID:8690See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332349.5 ENSP00000333350.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000332349.5Link to Ensembl Protein Viewer:ENSP00000333350.4Re-query CCDS DB by Nucleotide ID:ENST00000332349Re-query CCDS DB by Protein ID:ENSP00000333350
Original member Current member NCBI NM_001261833.2 NP_001248762.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001261833.2Link to Protein Sequence:NP_001248762.1Re-query CCDS DB by Nucleotide ID:NM_001261833Re-query CCDS DB by Protein ID:NP_001248762Link to BLAST:NP_001248762.1
Original member Current member NCBI NM_003772.4 NP_003763.2 Accepted alive Link to Nucleotide Sequence:NM_003772.4Link to Protein Sequence:NP_003763.2Re-query CCDS DB by Nucleotide ID:NM_003772Re-query CCDS DB by Protein ID:NP_003763Link to BLAST:NP_003763.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001248762.1 524 Q9Y4A0 524 100% 0 0
NP_003763.2 524 Q9Y4A0 524 100% 0 0

Chromosomal Locations for CCDS 8308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96390650 96392224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGTCAGGGAAACGGAAGCGTGTGGTGTTGACTATTAAAGATAAGCTTGATATAATAAAGAAACTTGAAG
ACGGAGGTTCTTCCAAACAACTGGCAGTGATTTATGGAATTGGTGAAACAACAGTTCGGGATATAAGAAA
AAATAAGGAAAAGATTATAACTTATGCAAGCAGTTCTGATTCCACAAGTCTTTTGGCCAAGAGGAAATCT
ATGAAGCCATCCATGTATGAGGAATTGGACAGGGCAATGCTGGAATGGTTCAACCAGCAAAGAGCAAAAG
GGAATCCCATATCTGGACCAATTTGTGCAAAAAGGGCAGAGTTCTTCTTTTATGCTTTGGGAATGGATGG
TGATTTTAACCCCTCTGCCGGTTGGCTAACTCGTTTTAAGCAGCGGCACAGCATTAGAGAGATTAACATT
AGAAATGAAAGATTAAATGGAGATGAGACTGCGGTGGAAGATTTTTGTAATAACTTTCGAGATTTTATTG
AACGAGAGAATTTACAGCCTGAACAAATCTACAATGCAGATGAAACTGGACTCTTTTGGAAGTGCTTGCC
TTCTAGGATTTCAGTAATCAAAGGTAAATGCACTGTCCCTGGGCACAAATCAATTGAAGAAAGAGTCACA
ATCATGTGTTGTGCCAATGCAACAGGTTTACACAAACTTAAACTTTGTGTTGTGGGGAAAGCAAAGAAAC
CTCGCTCCTTTAAATCAACTGACACCTTAAACCTGCCAGTCTCTTATTTCAGCCAAAAAGGTGCATGGAT
GGATCTTTCCATTTTCCGACAATGGTTTGATAAAATTTTTGTGCCGCAAGTTCGAGAGTATTTAAGATCT
AAAGGCTTGCAGGAAAAGGCTGTGCTCTTGTTGGATAATTCACCAACACATCCAAATGAAAATGTCCTAA
GGTCAGATGATGGCCAAATATTTGCTAAATATTTACCACCTAATGTGGCCTCATTGATTCAGCCTTCAGA
TCAGGGAGTCATAGCAACGATGAAGAGAAATTATCGTGCAGGTCTTCTCCAGAACAACTTGGAAGAAGGT
AATGACCTGAAATCATTCTGGAAGAAGCTAACTCTGTTGGATGCACTTTATGAAATAGCAATGGCATGGA
ACTTAGTAAAACCAGTTACCATTAGCAGAGCATGGAAGAAGATTCTCCCTATGGTAGAGGAGAAAGAGAG
CCTGGACTTTGATGTTGAAGATATTTCTGTGGCTACTGTGGCTGCCATTTTACAACACACCAAAGGATTG
GAAAATGTGACTACTGAGAACCTTGAAAAATGGCTTGAAGTAGACAGTACTGAACCAGGCTATGAAGTGT
TAACTGATAGCGAAATCATCAGAAGAGCACAAGGCCAGGCAGATGAATCCAGTGAAAATGAGGAGGAGGA
AATAGAACTAATTCCAGAGAAACATATTAATCATGCAGCTGCCCTCCAGTGGACTGAAAATTTATTGGAT
TATCTAGAACAACAAGGTGATATGATTCTACCTGATAGACTGGTAATACGTAAACTTCGAGCCACCATCA
GAAATAAACAGAAGATGACAAAGTCAAGTCAATAA

Translation (524 aa):
MSGKRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEKIITYASSSDSTSLLAKRKS
MKPSMYEELDRAMLEWFNQQRAKGNPISGPICAKRAEFFFYALGMDGDFNPSAGWLTRFKQRHSIREINI
RNERLNGDETAVEDFCNNFRDFIERENLQPEQIYNADETGLFWKCLPSRISVIKGKCTVPGHKSIEERVT
IMCCANATGLHKLKLCVVGKAKKPRSFKSTDTLNLPVSYFSQKGAWMDLSIFRQWFDKIFVPQVREYLRS
KGLQEKAVLLLDNSPTHPNENVLRSDDGQIFAKYLPPNVASLIQPSDQGVIATMKRNYRAGLLQNNLEEG
NDLKSFWKKLTLLDALYEIAMAWNLVKPVTISRAWKKILPMVEEKESLDFDVEDISVATVAAILQHTKGL
ENVTTENLEKWLEVDSTEPGYEVLTDSEIIRRAQGQADESSENEEEEIELIPEKHINHAAALQWTENLLD
YLEQQGDMILPDRLVIRKLRATIRNKQKMTKSSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH