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Report for CCDS58861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58861.1 Public Homo sapiens 3 PEX5L 24 110 108 CCDS HistoryNCBI Gene:51555Re-query CCDS DB by CCDS ID:58861.1Re-query CCDS DB by GeneID:51555See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58861.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000468741.5 ENSP00000418665.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000468741.5Link to Ensembl Protein Viewer:ENSP00000418665.1Re-query CCDS DB by Nucleotide ID:ENST00000468741Re-query CCDS DB by Protein ID:ENSP00000418665
Original member Current member NCBI NM_001256756.2 NP_001243685.1 Accepted alive Link to Nucleotide Sequence:NM_001256756.2Link to Protein Sequence:NP_001243685.1Re-query CCDS DB by Nucleotide ID:NM_001256756Re-query CCDS DB by Protein ID:NP_001243685Link to BLAST:NP_001243685.1
Original member Current member NCBI NM_001349399.2 NP_001336328.1 Accepted alive Link to Nucleotide Sequence:NM_001349399.2Link to Protein Sequence:NP_001336328.1Re-query CCDS DB by Nucleotide ID:NM_001349399Re-query CCDS DB by Protein ID:NP_001336328Link to BLAST:NP_001336328.1
Original member Current member NCBI NM_001349401.2 NP_001336330.1 Accepted alive Link to Nucleotide Sequence:NM_001349401.2Link to Protein Sequence:NP_001336330.1Re-query CCDS DB by Nucleotide ID:NM_001349401Re-query CCDS DB by Protein ID:NP_001336330Link to BLAST:NP_001336330.1
Original member Current member NCBI NM_001349404.2 NP_001336333.1 Accepted alive Link to Nucleotide Sequence:NM_001349404.2Link to Protein Sequence:NP_001336333.1Re-query CCDS DB by Nucleotide ID:NM_001349404Re-query CCDS DB by Protein ID:NP_001336333Link to BLAST:NP_001336333.1
Original member Current member NCBI NM_001349406.2 NP_001336335.1 Accepted alive Link to Nucleotide Sequence:NM_001349406.2Link to Protein Sequence:NP_001336335.1Re-query CCDS DB by Nucleotide ID:NM_001349406Re-query CCDS DB by Protein ID:NP_001336335Link to BLAST:NP_001336335.1
Original member Current member NCBI NM_001349408.2 NP_001336337.1 Accepted alive Link to Nucleotide Sequence:NM_001349408.2Link to Protein Sequence:NP_001336337.1Re-query CCDS DB by Nucleotide ID:NM_001349408Re-query CCDS DB by Protein ID:NP_001336337Link to BLAST:NP_001336337.1
Original member Current member NCBI NM_001349409.2 NP_001336338.1 Accepted alive Link to Nucleotide Sequence:NM_001349409.2Link to Protein Sequence:NP_001336338.1Re-query CCDS DB by Nucleotide ID:NM_001349409Re-query CCDS DB by Protein ID:NP_001336338Link to BLAST:NP_001336338.1
Original member Current member NCBI NM_001349410.2 NP_001336339.1 Accepted alive Link to Nucleotide Sequence:NM_001349410.2Link to Protein Sequence:NP_001336339.1Re-query CCDS DB by Nucleotide ID:NM_001349410Re-query CCDS DB by Protein ID:NP_001336339Link to BLAST:NP_001336339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243685.1 434 Q8IYB4-8 434 100% 0 0
NP_001336328.1 434 Q8IYB4-8 434 100% 0 0
NP_001336330.1 434 Q8IYB4-8 434 100% 0 0
NP_001336333.1 434 Q8IYB4-8 434 100% 0 0
NP_001336335.1 434 Q8IYB4-8 434 100% 0 0
NP_001336337.1 434 Q8IYB4-8 434 100% 0 0
NP_001336338.1 434 Q8IYB4-8 434 100% 0 0
NP_001336339.1 434 Q8IYB4-8 434 100% 0 0

Chromosomal Locations for CCDS 58861.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179801828 179802032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179807674 179807831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179808272 179808437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179809471 179809668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179811801 179811871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179815861 179816004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179819860 179819976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179859062 179859157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179874327 179874423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179875354 179875406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGCAGAGAGAAAATCATCCTCATCTAGAACTGGATCAAAAGAGCTCTTATGGTCCTCAGAACACAGAT
CTCAACCAGAACTGAGTGGTGGAAAAAGCGCCCTCAACTCTGAGTCGGCTTCAGAATTGGAATTAGTGGC
TCCGACTCAGGCTCGACTGACCAAAGAACATCGCTGGGGAAGCGCATTACTTTCTAGAAACCACTCCTTA
GAAGAAGAGTTTGAAAGGGCAAAAGCAGCAGTGGAGTCAGATACAGAGTTTTGGGATAAGATGCAAGCAG
AATGGGAAGAAATGGCTCGGAGGAACTGGATATCTGAGAACCAAGAAGCCCAGAACCAAGTAACCATCTC
GGCTAGTGAGAAGGGATATTACTTTCACACTGAAAACCCCTTCAAGGACTGGCCTGGAGCATTTGAAGAA
GGCTTAAAAAGGCTGAAGGAAGGGGATCTGCCAGTCACCATCCTGTTCATGGAAGCAGCAATTCTTCAGG
ACCCTGGAGATGCAGAGGCATGGCAGTTCCTCGGGATAACCCAGGCGGAGAATGAAAATGAACAAGCAGC
TATTGTCGCCCTCCAGAGGTGCTTAGAATTACAGCCCAACAACTTAAAAGCTTTGATGGCCTTGGCTGTG
AGTTATACTAACACTGGCCATCAGCAGGATGCCTGTGACGCTCTGAAGAATTGGATTAAGCAAAATCCAA
AGTACAAATACCTTGTGAAAAGCAAGAAGGGATCTCCAGGCCTCACCCGGCGGATGTCTAAGTCCCCAGT
TGATAGCTCTGTTCTGGAAGGGGTGAAGGAATTATATCTGGAAGCTGCCCACCAAAATGGAGATATGATC
GACCCAGACCTGCAGACAGGTCTAGGGGTTCTGTTCCACCTGAGTGGAGAATTTAATAGAGCAATAGATG
CATTTAACGCTGCCTTAACTGTTCGGCCAGAGGACTATTCACTATGGAACCGCCTCGGGGCGACCTTGGC
GAACGGAGACCGCAGCGAGGAAGCCGTGGAGGCCTATACGCGAGCACTGGAGATTCAGCCAGGATTCATC
CGGTCCAGATACAACCTAGGAATAAGCTGCATCAACCTGGGCGCCTACAGAGAAGCGGTCAGCAATTTTC
TCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCTGCAATCTCTGGGAA
TATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCCAGGCGGCTAATCTT
GGTGACCTGGATGTCCTCTTAAGAGCTTTCAACTTGGATCCTTGA

Translation (434 aa):
MAERKSSSSRTGSKELLWSSEHRSQPELSGGKSALNSESASELELVAPTQARLTKEHRWGSALLSRNHSL
EEEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTISASEKGYYFHTENPFKDWPGAFEE
GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV
SYTNTGHQQDACDALKNWIKQNPKYKYLVKSKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI
DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI
RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL
GDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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