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Report for CCDS8739.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8739.1 Public Homo sapiens 12 PDZRN4 24 110 108 CCDS HistoryNCBI Gene:29951Re-query CCDS DB by CCDS ID:8739.1Re-query CCDS DB by GeneID:29951See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8739.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539469.6 ENSP00000439990.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539469.6Link to Ensembl Protein Viewer:ENSP00000439990.2Re-query CCDS DB by Nucleotide ID:ENST00000539469Re-query CCDS DB by Protein ID:ENSP00000439990
Original member Current member NCBI NM_013377.4 NP_037509.3 Accepted alive Link to Nucleotide Sequence:NM_013377.4Link to Protein Sequence:NP_037509.3Re-query CCDS DB by Nucleotide ID:NM_013377Re-query CCDS DB by Protein ID:NP_037509Link to BLAST:NP_037509.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037509.3 778 Q6ZMN7-2 778 100% 0 0

Chromosomal Locations for CCDS 8739.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 41437945 41438013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41506456 41506712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41509811 41509913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41552656 41552754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41555698 41555760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41563548 41563649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41567783 41567899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 41572364 41573890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2337 nt):
ATGGGCTGCAATTTGTGCACTTTTCAGAAAAGAGAGGAACACTACAAACTGCTGTATGAAGTTTCCCAGG
TCAATGGGAAGGATCTTTCAAAGGCCACTCATGAAGAGGCAGTGGAAGCTTTTCGCAATGCCAAGGAGCC
CATTGTGGTGCAGGTGTTAAGGCGAACACCTCTTAGTAGACCAGCCTATGGGATGGCTTCAGAAGTGCAG
CTTATGAATGCCAGCACTCAGACGGACATCACCTTCGAACACATCATGGCTCTGGCCAAGCTTCGTCCAC
CTACCCCTCCAGTGCCAGACATCTGTCCATTCCTGCTCTCAGACAGCTGCCATTCTCTACATCCAATGGA
GCATGAATTTTATGAGGACAATGAGTATATTTCCAGCTTGCCTGCTGATGCAGACAGAACAGAAGACTTT
GAATATGAGGAGGTCGAGTTGTGTCGTGTTAGCAGTCAAGAGAAGCTGGGCCTGACAGTCTGTTACCGAA
CAGATGATGAAGAAGACACCGGCATTTATGTCAGCGAGGTTGACCCAAATAGCATTGCTGCCAAAGACGG
CCGGATTCGAGAAGGGGATCGGATTTTGCAAATAAATGGGGAAGATGTCCAGAATCGAGAAGAAGCAGTG
GCCTTGCTGTCTAACGATGAGTGTAAGAGAATCGTGCTGCTTGTTGCAAGGCCAGAGATTCAGCTGGATG
AAGGCTGGCTGGAAGATGAAAGGAATGAATTCTTAGAGGAGTTAAACTTGGAGATGTTGGAAGAAGAGCA
TAATGAAGCAATGCAGCCCACTGCCAATGAGGTGGAGCAGCCAAAAAAGCAAGAAGAAGAAGAAGGCACA
ACAGACACTGCAACATCCTCATCCAACAACCATGAGAAGGACAGTGGAGTAGGACGTACAGATGAAAGCT
TGCGAAATGATGAGAGCTCAGAGCAGGAGAATGCAGCCGAGGACCCCAATAGCACATCTTTGAAGAGCAA
GAGAGACCTGGGGCAGAGCCAAGACACTCTGGGAAGTGTTGAACTTCAGTACAATGAGAGCCTCGTATCT
GGTGAATACATTGACTCAGACTGCATTGGCAACCCAGATGAGGACTGTGAAAGATTCAGGCAGCTCTTGG
AGCTCAAATGCAAGATTCGAAATCATGGAGAGTATGACCTGTATTACTCAAGCAGCACAATTGAATGCAA
TCAAGGGGAGCAAGAGGGAGTGGAGCATGAGCTACAGTTGCTTAATGAAGAACTGAGAAACATTGAGCTT
GAGTGTCAGAATATCATGCAGGCTCACAGGCTCCAGAAAGTGACAGACCAGTATGGAGACATCTGGACAT
TGCATGATGGAGGATTCCGGAATTATAACACCAGCATAGATATGCAAAGGGGAAAGCTAGATGACATCAT
GGAGCATCCAGAAAAGTCTGACAAGGACAGTTCTAGTGCTTACAACACAGCTGAGAGCTGCAGAAGTACT
CCGCTCACTGTAGACCGTTCCCCTGACAGTTCCCTTCCAAGGGTGATCAACCTCACCAATAAGAAAAACC
TGAGAAGCACAATGGCAGCCACCCAGTCCTCTTCCGGACAGAGCAGTAAAGAGTCGACCTCCACCAAAGC
CAAAACCACTGAGCAAGGTTGTAGCGCTGAAAGCAAGGAGAAGGTTTTAGAAGGCAGCAAGCTTCCTGAT
CAAGAGAAGGCAGTCAGCGAACACATCCCTTACCTCTCTCCTTACCACAGCTCCTCATATAGATATGCAA
ACATCCCAGCACACGCCCGGCATTATCAAAGCTACATGCAGTTAATTCAACAGAAATCTGCAGTCGAGTA
TGCTCAGAGTCAGCTCAGCTTGGTGAGCATGTGCAAGGAGTCTCAGAAGTGTTCAGAGCCCAAGATGGAA
TGGAAGGTGAAAATTAGGAGCGACGGGACACGGTACATCACAAAGAGACCCGTGCGAGACCGAATCCTGA
AGGAACGTGCCTTAAAGATCAAGGAAGAGCGGAGTGGCATGACCACAGACGATGACACCATGAGCGAGAT
GAAAATGGGGCGCTACTGGAGCAAAGAGGAGAGAAAGCAGCACCTGGTTAGGGCCAAAGAGCAGCGCCGT
CGCCGTGAGTTCATGATGCGAAGCAGGTTAGAGTGTCTCAAGGAGAGCCCTCAGAGCGGCAGTGAGGGCA
AGAAGGAGATCAATATCATTGAACTGAGTCACAAAAAGATGATGAAAAAGAGAAACAAGAAAATTTTGGA
CAACTGGATGACAATCCAAGAACTGATGACCCATGGGGCCAAGTCTCCAGATGGCACGAGAGTCCATAAT
GCCTTCTTGTCGGTGACCACTGTATGA

Translation (778 aa):
MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNAKEPIVVQVLRRTPLSRPAYGMASEVQ
LMNASTQTDITFEHIMALAKLRPPTPPVPDICPFLLSDSCHSLHPMEHEFYEDNEYISSLPADADRTEDF
EYEEVELCRVSSQEKLGLTVCYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAV
ALLSNDECKRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGT
TDTATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRDLGQSQDTLGSVELQYNESLVS
GEYIDSDCIGNPDEDCERFRQLLELKCKIRNHGEYDLYYSSSTIECNQGEQEGVEHELQLLNEELRNIEL
ECQNIMQAHRLQKVTDQYGDIWTLHDGGFRNYNTSIDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRST
PLTVDRSPDSSLPRVINLTNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPD
QEKAVSEHIPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKCSEPKME
WKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRR
RREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHN
AFLSVTTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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