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Report for CCDS82089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82089.1 Public Homo sapiens 17 B9D1 24 110 108 CCDS HistoryNCBI Gene:27077Re-query CCDS DB by CCDS ID:82089.1Re-query CCDS DB by GeneID:27077See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82089.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268841.10 ENSP00000268841.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000268841.10Link to Ensembl Protein Viewer:ENSP00000268841.6Re-query CCDS DB by Nucleotide ID:ENST00000268841Re-query CCDS DB by Protein ID:ENSP00000268841
Original member Current member NCBI NM_001321216.2 NP_001308145.1 Accepted alive Link to Nucleotide Sequence:NM_001321216.2Link to Protein Sequence:NP_001308145.1Re-query CCDS DB by Nucleotide ID:NM_001321216Re-query CCDS DB by Protein ID:NP_001308145Link to BLAST:NP_001308145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308145.1 153 Q9UPM9-2 153 100% 0 0

Chromosomal Locations for CCDS 82089.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19347139 19347196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19347269 19347331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19347784 19347880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19357840 19357951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19360320 19360388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19362507 19362569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGGCGACCGCGAGTCCTAGCGTCTTTCTACTCATGGTCAACGGGCAGGTGGAGAGCGCCCAGTTTCCAG
AGTATGATGACCTCTACTGCAAGTACTGCTTTGTGTACGGCCAGGACTGGGCCCCCACAGCGGGTCTGGA
GGAGGGGATCTCACAGATCACATCCAAGAGCCAAGATGTGCGGCAAGCACTGGTGTGGAACTTCCCCATT
GATGTCACCTTTAAAAGCACCAACCCCTACGGCTGGCCACAGATCGTGCTCAGCGTGTATGGACCAGATG
TGTTCGGGAACGATGTGGTTCGAGGCTATGGGGCCGTGCACGTGCCCTTCTCACCTGGCCGGCACAAAAG
GACCATCCCCATGTTTGTCCCAGAATCTACGTCTAAACTGCAGAAGTTTACAAGTTTGTGCCTGGTCGCC
TCCTCAGATCTGCAAGCTGCTCCACCCACTGAGGACAAATAG

Translation (153 aa):
MATASPSVFLLMVNGQVESAQFPEYDDLYCKYCFVYGQDWAPTAGLEEGISQITSKSQDVRQALVWNFPI
DVTFKSTNPYGWPQIVLSVYGPDVFGNDVVRGYGAVHVPFSPGRHKRTIPMFVPESTSKLQKFTSLCLVA
SSDLQAAPPTEDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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