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Report for CCDS82110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82110.1 Public Homo sapiens 17 C17orf78 24 110 108 CCDS HistoryNCBI Gene:284099Re-query CCDS DB by CCDS ID:82110.1Re-query CCDS DB by GeneID:284099See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82110.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611038.4 ENSP00000477816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611038.4Link to Ensembl Protein Viewer:ENSP00000477816.1Re-query CCDS DB by Nucleotide ID:ENST00000611038Re-query CCDS DB by Protein ID:ENSP00000477816
Original member Current member NCBI NM_001321399.2 NP_001308328.1 Accepted alive Link to Nucleotide Sequence:NM_001321399.2Link to Protein Sequence:NP_001308328.1Re-query CCDS DB by Nucleotide ID:NM_001321399Re-query CCDS DB by Protein ID:NP_001308328Link to BLAST:NP_001308328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308328.1 159 Q8N4C9-2 159 100% 0 0

Chromosomal Locations for CCDS 82110.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37376093 37376150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37377879 37377965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37379137 37379382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37389246 37389334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGGATACCATCTTGGTCTTCAGCCTAATCATTGCATCCTATGATGCCAACAAGAAAGACCTCAGAGATA
GCAGTTGCCGACTGGAACAGCTGCCTGGGATCTTCCCAAAAGACGTGAGAAGCATCAGAGAATTGCAAAT
GCAAGAAACTCACACAGAAACCAAAAGGACAACATTCATTCAAAACCGGACTATAGCTACCCTGCAGTGC
CTTGGCTCTGACAGCAAAGTAAAAGTCAACCTTGTATATTTGGAGAGAAGGCCAAAGGTCAAGCATATTT
TGAAGAACCTGAGAATCATTGCTGCTCCCCGCAGAAACAGCTCTGCCTCCTCAAGCTGTCACCTAATCCC
CACATCCAAGTTTCAGACTGGATCTCTTCTAAAAGGCAAAGTATCAATGCCTAGGAGCCAGGAAGCTGTG
CCAATGCCAGTGGTTGTGGAGATGGCAAAAGAAGGGAGGCCAGCCACCTGGGACAGCTGA

Translation (159 aa):
MDTILVFSLIIASYDANKKDLRDSSCRLEQLPGIFPKDVRSIRELQMQETHTETKRTTFIQNRTIATLQC
LGSDSKVKVNLVYLERRPKVKHILKNLRIIAAPRRNSSASSSCHLIPTSKFQTGSLLKGKVSMPRSQEAV
PMPVVVEMAKEGRPATWDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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