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Report for CCDS62707.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
62707.1 Public Homo sapiens 19 ZNF180 24 110 108 CCDS HistoryNCBI Gene:7733Re-query CCDS DB by CCDS ID:62707.1Re-query CCDS DB by GeneID:7733See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 62707.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000592529.6 ENSP00000468021.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000592529.6Link to Ensembl Protein Viewer:ENSP00000468021.1Re-query CCDS DB by Nucleotide ID:ENST00000592529Re-query CCDS DB by Protein ID:ENSP00000468021
Original member Current member NCBI NM_001278509.3 NP_001265438.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001278509.3Link to Protein Sequence:NP_001265438.2Re-query CCDS DB by Nucleotide ID:NM_001278509Re-query CCDS DB by Protein ID:NP_001265438Link to BLAST:NP_001265438.2
Original member Current member NCBI NM_001291633.2 NP_001278562.1 Accepted alive Link to Nucleotide Sequence:NM_001291633.2Link to Protein Sequence:NP_001278562.1Re-query CCDS DB by Nucleotide ID:NM_001291633Re-query CCDS DB by Protein ID:NP_001278562Link to BLAST:NP_001278562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265438.2 665 Q9UJW8-2 665 100% 0 0
NP_001278562.1 665 Q9UJW8-2 665 100% 0 0

Chromosomal Locations for CCDS 62707.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 44476402 44478146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44479283 44479409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44484361 44484435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 44497284 44497334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1998 nt):
ATGGAAGAGCAGGATGAGAAGCCCCCAGAGCCCCCGAAGGTCTGTGCACAGGATTCTTTCCTTCCTCAAG
AGATTATCATCAAAGTCGAGGGAGAAGACACTGGGTCTCTGACCATCCCATCTCAGGAAGGAGTGAACTT
CAAAATTGTGACTGTGGACTTCACACGGGAGGAACAGGGTACTTGCAACCCTGCTCAGAGGACCCTGGAC
AGAGATGTGATCCTGGAGAACCACAGGGACCTAGTCTCTTGGGACTTGGCAACTGCAGTTGGAAAAAAAG
ATTCAACTTCAAAGCAGAGGATTTTTGATGAAGAACCAGCTAATGGAGTGAAGATAGAAAGGTTTACAAG
GGATGATCCTTGGTTATCTTCATGTGAAGAAGTGGATGATTGTAAAGACCAGTTGGAGAAGCAACAGGAA
AAACAAGAGATACTTTTGCAGGAAGTGGCATTCACTCAAAGGAAAGCAGTTATTCATGAGAGAGTCTGCA
AAAGTGATGAAACTGGGGAGAAGAGTGGTCTGAATTCCAGTCTATTTTCATCCCCAGTTATACCCATAAG
AAACCATTTTCATAAACATGTATCACATGCTAAAAAATGGCATCTTAATGCTGCTGTAAACAGTCATCAG
AAGATTAATGAGAATGAGACACTATATGAAAATAATGAATGTGGAAAACCCCCTCAGAGCATTCACCTTA
TTCAGTTTACAAGAACTCAAACAAAAGATAAATCCTATGGATTTAGTGACCGTATTCAATCTTTTTGCCA
TGGTACACCCCTACATATACATGAAAAAATTCATGGAGGAGGAAAAACCTTTGATTTTAAAGAATGTGGG
CAGGTTTTGAACCCCAAAATATCCCATAATGAACAACAGAGAATTCCTTTTGAAGAGAGTCAATATAAAT
GTAGTGAAACCTCTCATAGTTCCTCCCTTACTCAAAACATGAGAAATAATTCTGAAGAGAAACCTTTTGA
ATGTAATCAGTGTGGGAAATCCTTCAGCTGGAGCTCGCATCTTGTTGCACATCAGAGAACTCACACAGGG
GAGAAACCTTATGAATGTAGTGAATGTGGAAAATCCTTCAGCCGGAGCTCGCACCTTGTTTCCCATCAGA
GAACTCATACTGGAGAGAAACCTTACAGGTGTAATCAATGTGGGAAATCCTTTAGCCAGAGTTATGTCCT
TGTTGTGCATCAAAGAACTCATACTGGGGAGAAGCCTTATGAATGCAATCAGTGTGGAAAGTCATTCAGG
CAGAGCTATAAACTTATTGCACATCAAAGAACACATACCGGAGAGAAGCCCTATGAATGTAATCAATGTG
GGAAATCATTTATCCAGAGCTATAAACTTATTGCACATCAAAGAATTCATACTGGGGAAAAACCCTATGA
ATGCAATCAGTGTGGGAAATCCTTTAGTCAAAGTTATAAACTTGTTGCTCATCAGAGAACTCACACAGGA
GAAAAACCCTTTGAATGTAATCAGTGTGGGAAATCCTTCAGCTGGAGCTCTCAGCTTGTTGCACATCAAA
GAACTCACACTGGAGAGAAACCGTATGAATGTAGTGAATGTGGAAAATCTTTTAACCGCAGTTCTCACCT
TGTTATGCATCAGAGAATTCACACTGGGGAAAAACCGTATGAATGTAATCAGTGTGGGAAATCCTTCAGC
CAGAGTTATGTTCTTGTTGTACATCAGAGAACTCATACTGGAGAAAAGCCCTATGAATGCAGTCAATGTG
GGAAGTCCTTCAGACAGAGTTCATGCCTTACTCAACATCAGAGAACTCATACTGGAGAGAAACCATTTGA
ATGTAATCAGTGTGGAAAAACATTTAGCTTGAGTGCTCGACTTATTGTGCATCAAAGAACTCATACTGGA
GAGAAACCCTTTACATGTATTCAGTGTGGAAAAGCTTTCATTAATAGCTATAAACTTATTAGGCATCAGG
CAACTCATACTGAAGAGAAACTCTATGAATGTAACTAG

Translation (665 aa):
MEEQDEKPPEPPKVCAQDSFLPQEIIIKVEGEDTGSLTIPSQEGVNFKIVTVDFTREEQGTCNPAQRTLD
RDVILENHRDLVSWDLATAVGKKDSTSKQRIFDEEPANGVKIERFTRDDPWLSSCEEVDDCKDQLEKQQE
KQEILLQEVAFTQRKAVIHERVCKSDETGEKSGLNSSLFSSPVIPIRNHFHKHVSHAKKWHLNAAVNSHQ
KINENETLYENNECGKPPQSIHLIQFTRTQTKDKSYGFSDRIQSFCHGTPLHIHEKIHGGGKTFDFKECG
QVLNPKISHNEQQRIPFEESQYKCSETSHSSSLTQNMRNNSEEKPFECNQCGKSFSWSSHLVAHQRTHTG
EKPYECSECGKSFSRSSHLVSHQRTHTGEKPYRCNQCGKSFSQSYVLVVHQRTHTGEKPYECNQCGKSFR
QSYKLIAHQRTHTGEKPYECNQCGKSFIQSYKLIAHQRIHTGEKPYECNQCGKSFSQSYKLVAHQRTHTG
EKPFECNQCGKSFSWSSQLVAHQRTHTGEKPYECSECGKSFNRSSHLVMHQRIHTGEKPYECNQCGKSFS
QSYVLVVHQRTHTGEKPYECSQCGKSFRQSSCLTQHQRTHTGEKPFECNQCGKTFSLSARLIVHQRTHTG
EKPFTCIQCGKAFINSYKLIRHQATHTEEKLYECN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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