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Report for CCDS7657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7657.1 Public Homo sapiens 10 PTPRE 24 110 108 CCDS HistoryNCBI Gene:5791Re-query CCDS DB by CCDS ID:7657.1Re-query CCDS DB by GeneID:5791See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7657.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254667.8 ENSP00000254667.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254667.8Link to Ensembl Protein Viewer:ENSP00000254667.3Re-query CCDS DB by Nucleotide ID:ENST00000254667Re-query CCDS DB by Protein ID:ENSP00000254667
Original member Current member NCBI NM_001316677.2 NP_001303606.1 Accepted alive Link to Nucleotide Sequence:NM_001316677.2Link to Protein Sequence:NP_001303606.1Re-query CCDS DB by Nucleotide ID:NM_001316677Re-query CCDS DB by Protein ID:NP_001303606Link to BLAST:NP_001303606.1
Original member Current member NCBI NM_001323354.2 NP_001310283.1 Accepted alive Link to Nucleotide Sequence:NM_001323354.2Link to Protein Sequence:NP_001310283.1Re-query CCDS DB by Nucleotide ID:NM_001323354Re-query CCDS DB by Protein ID:NP_001310283Link to BLAST:NP_001310283.1
Original member Current member NCBI NM_006504.6 NP_006495.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006504.6Link to Protein Sequence:NP_006495.1Re-query CCDS DB by Nucleotide ID:NM_006504Re-query CCDS DB by Protein ID:NP_006495Link to BLAST:NP_006495.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303606.1 700 P23469-1 700 100% 0 0
NP_001310283.1 700 P23469-1 700 100% 0 0
NP_006495.1 700 P23469-1 700 100% 0 0

Chromosomal Locations for CCDS 7657.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 128040882 128040990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128047390 128047489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128047764 128047837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128049530 128049666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128056123 128056213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128060939 128061015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128061679 128061715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128063083 128063180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128066075 128066194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128068123 128068286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128069692 128069827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128070301 128070450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128070808 128070901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128072138 128072214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128073337 128073471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128076603 128076728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128077617 128077783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128079560 128079695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 128082832 128082906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2103 nt):
ATGGAGCCCTTGTGTCCACTCCTGCTGGTGGGTTTTAGCTTGCCGCTCGCCAGGGCTCTCAGGGGCAACG
AGACCACTGCCGACAGCAACGAGACAACCACGACCTCAGGCCCTCCGGACCCGGGCGCCTCCCAGCCGCT
GCTGGCCTGGCTGCTACTGCCGCTGCTGCTCCTCCTCCTCGTGCTCCTTCTCGCCGCCTACTTCTTCAGG
TTCAGGAAGCAGAGGAAAGCTGTGGTCAGCACCAGCGACAAGAAGATGCCCAACGGAATCTTGGAGGAGC
AAGAGCAGCAAAGGGTGATGCTGCTCAGCAGGTCACCCTCAGGGCCCAAGAAGTATTTTCCCATCCCCGT
GGAGCACCTGGAGGAGGAGATCCGTATCAGATCCGCCGACGACTGCAAGCAGTTTCGGGAGGAGTTCAAC
TCATTGCCATCTGGACACATACAAGGAACTTTTGAACTGGCAAATAAAGAAGAAAACAGAGAAAAAAACA
GATATCCCAACATCCTTCCCAATGACCATTCTAGGGTGATTCTGAGCCAACTGGATGGAATTCCCTGTTC
AGACTACATCAATGCTTCCTACATAGATGGTTACAAAGAGAAGAATAAATTCATAGCAGCTCAAGGTCCC
AAACAGGAAACGGTTAACGACTTCTGGAGAATGGTCTGGGAGCAAAAGTCTGCGACCATCGTCATGTTAA
CAAACTTGAAAGAAAGGAAAGAGGAAAAGTGCCATCAGTACTGGCCCGACCAAGGCTGCTGGACCTATGG
AAACATCCGGGTGTGCGTGGAGGACTGCGTGGTTTTGGTCGACTACACCATCCGGAAGTTCTGCATACAG
CCACAGCTCCCCGACGGCTGCAAAGCCCCCAGGCTGGTCTCACAGCTGCACTTCACCAGCTGGCCCGACT
TCGGAGTGCCTTTTACCCCCATTGGGATGCTGAAGTTCCTCAAGAAAGTAAAGACGCTCAACCCCGTGCA
CGCTGGGCCCATCGTGGTCCACTGTAGCGCGGGCGTGGGCCGGACGGGCACCTTCATTGTGATCGATGCC
ATGATGGCCATGATGCACGCGGAGCAGAAGGTGGATGTGTTTGAATTTGTGTCTCGAATCCGTAATCAGC
GCCCTCAGATGGTTCAAACGGATATGCAGTACACGTTCATCTACCAAGCCTTACTCGAGTACTACCTCTA
CGGGGACACAGAGCTGGACGTGTCCTCCCTGGAGAAGCACCTGCAGACCATGCACGGCACCACCACCCAC
TTCGACAAGATCGGGCTGGAGGAGGAGTTCAGGAAATTGACAAATGTCCGGATCATGAAGGAGAACATGA
GGACGGGCAACTTGCCGGCAAACATGAAGAAGGCCAGGGTCATCCAGATCATCCCGTATGACTTCAACCG
AGTGATCCTTTCCATGAAAAGGGGTCAAGAATACACAGACTACATCAACGCATCCTTCATAGACGGCTAC
CGACAGAAGGACTATTTCATCGCCACCCAGGGGCCACTGGCACACACGGTTGAGGACTTCTGGAGGATGA
TCTGGGAATGGAAATCCCACACTATCGTGATGCTGACGGAGGTGCAGGAGAGAGAGCAGGATAAATGCTA
CCAGTATTGGCCAACCGAGGGCTCAGTTACTCATGGAGAAATAACGATTGAGATAAAGAATGATACCCTT
TCAGAAGCCATCAGTATACGAGACTTTCTGGTCACTCTCAATCAGCCCCAGGCCCGCCAGGAGGAGCAGG
TCCGAGTAGTGCGCCAGTTTCACTTCCACGGCTGGCCTGAGATCGGGATTCCCGCCGAGGGCAAAGGCAT
GATTGACCTCATCGCAGCCGTGCAGAAGCAGCAGCAGCAGACAGGCAACCACCCCATCACCGTGCACTGC
AGTGCCGGAGCTGGGCGAACAGGTACATTCATAGCCCTCAGCAACATTTTGGAGCGAGTAAAAGCCGAGG
GACTTTTAGATGTATTTCAAGCTGTGAAGAGTTTACGACTTCAGAGACCACATATGGTGCAAACCCTGGA
ACAGTATGAATTCTGCTACAAAGTGGTACAAGATTTTATTGATATATTTTCTGATTATGCTAATTTCAAA
TGA

Translation (700 aa):
MEPLCPLLLVGFSLPLARALRGNETTADSNETTTTSGPPDPGASQPLLAWLLLPLLLLLLVLLLAAYFFR
FRKQRKAVVSTSDKKMPNGILEEQEQQRVMLLSRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFN
SLPSGHIQGTFELANKEENREKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGP
KQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRKFCIQ
PQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVHCSAGVGRTGTFIVIDA
MMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTH
FDKIGLEEEFRKLTNVRIMKENMRTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGY
RQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTL
SEAISIRDFLVTLNQPQARQEEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHC
SAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSDYANFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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