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Report for CCDS34087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34087.1 Public Homo sapiens 4 GASK1B 24 110 108 CCDS HistoryNCBI Gene:51313Re-query CCDS DB by CCDS ID:34087.1Re-query CCDS DB by GeneID:51313See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393807.9 ENSP00000377396.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393807.9Link to Ensembl Protein Viewer:ENSP00000377396.4Re-query CCDS DB by Nucleotide ID:ENST00000393807Re-query CCDS DB by Protein ID:ENSP00000377396
Original member Current member NCBI NM_001031700.3 NP_001026870.2 Accepted alive Link to Nucleotide Sequence:NM_001031700.3Link to Protein Sequence:NP_001026870.2Re-query CCDS DB by Nucleotide ID:NM_001031700Re-query CCDS DB by Protein ID:NP_001026870Link to BLAST:NP_001026870.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001026870.2 527 Q6UWH4-2 527 100% 0 0

Chromosomal Locations for CCDS 34087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 158127407 158127614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158130786 158131012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158155611 158155748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158170247 158170347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 158170466 158171375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGACCTGTCCAGACAAGCCGGGGCAGCTCATAAACTGGTTCATCTGCTCCCTGTGCGTCCCGCGGGTGC
GTAAGCTCTGGAGCAGCCGGCGTCCAAGGACCCGGAGAAACCTTCTGCTGGGCACTGCGTGTGCCATCTA
CTTGGGCTTCCTGGTGAGCCAGGTGGGGAGGGCCTCTCTCCAGCATGGACAGGCGGCTGAGAAGGGGCCA
CATCGCAGCCGCGACACCGCCGAGCCATCCTTCCCTGAGATACCCCTGGATGGTACCCTGGCCCCTCCAG
AGTCCCAGGGCAATGGGTCCACTCTGCAGCCCAATGTGGTGTACATTACCCTACGCTCCAAGCGCAGCAA
GCCGGCCAATATCCGTGGCACCGTGAAGCCCAAGCGCAGGAAAAAGCATGCAGTGGCATCGGCTGCCCCA
GGGCAGGAGGCTTTGGTCGGACCATCCCTTCAGCCGCAGGAAGCGGCAAGGGAAGCTGATGCTGTAGCAC
CTGGGTACGCTCAGGGAGCAAACCTGGTTAAGATTGGAGAGCGACCCTGGAGGTTGGTGCGGGGTCCGGG
AGTGCGAGCCGGGGGCCCAGACTTCCTGCAGCCCAGCTCCAGGGAGAGCAACATTAGGATCTACAGCGAG
AGCGCCCCCTCCTGGCTGAGCAAAGATGACATCCGAAGAATGCGACTCTTGGCGGACAGCGCAGTGGCAG
GGCTCCGGCCTGTGTCCTCTAGGAGCGGAGCCCGTTTGCTGGTGCTGGAGGGGGGCGCACCTGGCGCTGT
GCTCCGCTGTGGCCCTAGCCCCTGTGGGCTTCTCAAGCAGCCCTTGGACATGAGTGAGGTGTTTGCCTTC
CACCTAGACAGGATCCTGGGGCTCAACAGGACCCTGCCGTCTGTGAGCAGGAAAGCAGAGTTCATCCAAG
CAGCAGCAGCAGCGTGTCTTTCCATGCGCTTGGCATTCTTTATTTTCCCAGCCTGGGAGGATATGAGAGT
TCCAGGGAAATGCTGTATTGGACATGCAAGACTCACCTGGGGAACTTATCAGCAGTTGCTGAAACAGAAA
TGCTGGCAGAATGGCCGAGTACCCAAGCCTGAATCGGGTTGTACTGAAATACATCATCATGAGTGGTCCA
AGATGGCACTCTTTGATTTTTTGTTACAGATTTATAATCGCTTAGATACAAATTGCTGTGGATTCAGACC
TCGCAAGGAAGATGCCTGTGTACAGAATGGATTGAGGCCAAAATGTGATGACCAAGGTTCTGCGGCTCTA
GCACACATTATCCAGCGAAAGCATGACCCAAGGCATTTGGTTTTTATAGACAACAAGGGTTTCTTTGACA
GGAGTGAAGATAACTTAAACTTCAAATTGTTAGAAGGCATCAAAGAGTTTCCAGCTTCTGCAGTTTCTGT
TTTGAAGAGCCAGCACTTACGGCAGAAACTTCTTCAGTCTCTGTTTCTTGATAAAGTGTATTGGGAAAGT
CAAGGAGGTAGACAAGGAATTGAAAAGCTTATCGATGTAATAGAACACAGAGCCAAAATTCTTATCACCT
ATATCAATGCACACGGGGTCAAAGTATTACCTATGAATGAATGA

Translation (527 aa):
MTCPDKPGQLINWFICSLCVPRVRKLWSSRRPRTRRNLLLGTACAIYLGFLVSQVGRASLQHGQAAEKGP
HRSRDTAEPSFPEIPLDGTLAPPESQGNGSTLQPNVVYITLRSKRSKPANIRGTVKPKRRKKHAVASAAP
GQEALVGPSLQPQEAAREADAVAPGYAQGANLVKIGERPWRLVRGPGVRAGGPDFLQPSSRESNIRIYSE
SAPSWLSKDDIRRMRLLADSAVAGLRPVSSRSGARLLVLEGGAPGAVLRCGPSPCGLLKQPLDMSEVFAF
HLDRILGLNRTLPSVSRKAEFIQAAAAACLSMRLAFFIFPAWEDMRVPGKCCIGHARLTWGTYQQLLKQK
CWQNGRVPKPESGCTEIHHHEWSKMALFDFLLQIYNRLDTNCCGFRPRKEDACVQNGLRPKCDDQGSAAL
AHIIQRKHDPRHLVFIDNKGFFDRSEDNLNFKLLEGIKEFPASAVSVLKSQHLRQKLLQSLFLDKVYWES
QGGRQGIEKLIDVIEHRAKILITYINAHGVKVLPMNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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