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Report for CCDS56145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56145.1 Public Homo sapiens 2 XIRP2 24 110 108 CCDS HistoryNCBI Gene:129446Re-query CCDS DB by CCDS ID:56145.1Re-query CCDS DB by GeneID:129446See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409605.1 ENSP00000386981.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409605.1Link to Ensembl Protein Viewer:ENSP00000386981.1Re-query CCDS DB by Nucleotide ID:ENST00000409605Re-query CCDS DB by Protein ID:ENSP00000386981
Original member Current member NCBI NM_001199145.2 NP_001186074.1 Accepted alive Link to Nucleotide Sequence:NM_001199145.2Link to Protein Sequence:NP_001186074.1Re-query CCDS DB by Nucleotide ID:NM_001199145Re-query CCDS DB by Protein ID:NP_001186074Link to BLAST:NP_001186074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001186074.1 716 A4UGR9-7 716 100% 0 0

Chromosomal Locations for CCDS 56145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167210839 167210895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167218166 167218300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167239855 167239965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167240664 167240736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167241777 167241910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167254032 167254165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167257857 167259363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2151 nt):
ATGGCGAGGTACCAGGCAGCTGTTTCCAGGGGTGACTGCCGCAGCTTCTCTGCTAATATGATGGAAGAAT
CAGAAATGTGCGCAGTGCCTGGTGGTTTGGCCAAGGTGAAGAAACAATTTGAGGACGAAATTACTTCTTC
CCGTAATACCTTTGCTCAATACCAATATCAACATCAGAACAGATCTGAGCAGGAGGCAATTCATAGCAGC
CAGGTTGGCACTTCAAGAAGCAGCCAGGAAATGGCAAGAAATGAACAAGAAGGGTCCAAAGTACAGAAAA
TTGATGTTCATGGAACAGAAATGGTCTCTCATCTTGAAAAGCACACCGAGGAAGTAAACCAAGCATCTCA
GTTTCATCAATATGTTCAAGAAACTGTCATTGATACACCTGAGGATGAAGAGATTCCAAAGGTTTCGACT
AAGTTGTTAAAAGAGCAGTTTGAAAAGTCTGCCCAGGAAAAGATCCTTTATTCTGACAAAGAGATGACAA
CCCCAGCCAAGCAGATTAAGAAGCTGCTGCTCCAAGACAAGGAAATATGTATACTTTGTCAAAAGACAGT
TTATCCAATGGAGTGCCTAGTGGCAGACAAGCAGAATTTTCATAAGTCCTGCTTCCGATGCCACCATTGC
AACAGTAAACTAAGTTTGGGAAATTATGCATCACTTCATGGACAAATATACTGTAAACCTCACTTTAAAC
AACTTTTCAAATCCAAAGGAAATTATGATGAAGGTTTTGGACATAAGCAGCATAAAGATAGATGGAACTG
CAAAAACCAAAGCAGATCAGTGGACTTTATTCCTAATGAAGAACCAAATATGTGTAAAAATATTGCAGAA
AACACCCTTGTACCTGGAGATCGTAATGAACATTTAGATGCTGGTAACAGTGAAGGGCAAAGGAATGATT
TGAGAAAATTAGGGGAAAGGGGAAAATTAAAAGTCATTTGGCCTCCTTCCAAGGAGATCCCTAAGAAAAC
CTTACCCTTTGAGGAAGAGCTCAAAATGAGTAAACCTAAGTGGCCACCTGAAATGACAACCCTGCTATCC
CCTGAATTTAAAAGTGAATCTCTGCTAGAAGATGTTAGAACTCCAGAAAATAAAGGACAAAGACAAGATC
ACTTTCCATTTTTGCAGCCTTATCTACAGTCCACCCATGTTTGTCAGAAAGAGGATGTTATAGGAATCAA
AGAAATGAAAATGCCTGAAGGAAGAAAAGATGAAAAGAAGGAAGGAAGGAAGAATGTGCAAGATAGGCCG
AGTGAAGCTGAAGACACAAAGAGTAACAGGAAAAGTGCTATGGATCTTAATGACAACAATAATGTGATTG
TGCAGAGTGCTGAAAAGGAGAAAAATGAAAAAACTAACCAAACTAATGGTGCAGAAGTTTTACAGGTTAC
TAACACTGATGATGAGATGATGCCAGAAAATCATAAAGAAAATTTGAATAAGAATAATAATAACAATTAT
GTAGCAGTCTCATATCTGAATAATTGCAGGCAGAAGACATCTATTTTAGAATTTCTTGATCTATTACCCT
TGTCGAGTGAAGCAAATGACACTGCAAATGAATATGAAATTGAGAAGTTAGAAAATACATCTAGAATCTC
AGAGTTACTTGGTATATTTGAATCTGAAAAGACTTATTCGAGGAATGTACTAGCAATGGCTCTGAAGAAA
CAGACTGACAGAGCAGCTGCTGGCAGTCCTGTGCAGCCTGCTCCAAAACCAAGCCTCAGCAGAGGCCTTA
TGGTAAAGGGGGGAAGTTCAATCATCTCTCCTGATACAAATCTCTTAAACATTAAAGGAAGCCATTCAAA
GAGCAAAAATTTACACTTTTTCTTTTCTAACACCGTGAAAATCACTGCATTTTCCAAGAAAAATGAGAAC
ATTTTCAATTGTGATTTAATAGATTCTGTAGATCAAATTAAAAATATGCCATGCTTGGATTTAAGGGAAT
TTGGAAAGGATGTTAAACCTTGGCATGTTGAAACAACAGAAGCTGCCCGCAATAATGAAAACACAGGTTT
TGATGCTCTGAGCCATGAATGTACAGCTAAGCCTTTGTTTCCCAGAGTGGAGGTGCAGTCAGAACAACTC
ACGGTGGAAGAGCAGATTAAAAGAAACAGGTGCTACAGTGACACTGAGTAA

Translation (716 aa):
MARYQAAVSRGDCRSFSANMMEESEMCAVPGGLAKVKKQFEDEITSSRNTFAQYQYQHQNRSEQEAIHSS
QVGTSRSSQEMARNEQEGSKVQKIDVHGTEMVSHLEKHTEEVNQASQFHQYVQETVIDTPEDEEIPKVST
KLLKEQFEKSAQEKILYSDKEMTTPAKQIKKLLLQDKEICILCQKTVYPMECLVADKQNFHKSCFRCHHC
NSKLSLGNYASLHGQIYCKPHFKQLFKSKGNYDEGFGHKQHKDRWNCKNQSRSVDFIPNEEPNMCKNIAE
NTLVPGDRNEHLDAGNSEGQRNDLRKLGERGKLKVIWPPSKEIPKKTLPFEEELKMSKPKWPPEMTTLLS
PEFKSESLLEDVRTPENKGQRQDHFPFLQPYLQSTHVCQKEDVIGIKEMKMPEGRKDEKKEGRKNVQDRP
SEAEDTKSNRKSAMDLNDNNNVIVQSAEKEKNEKTNQTNGAEVLQVTNTDDEMMPENHKENLNKNNNNNY
VAVSYLNNCRQKTSILEFLDLLPLSSEANDTANEYEIEKLENTSRISELLGIFESEKTYSRNVLAMALKK
QTDRAAAGSPVQPAPKPSLSRGLMVKGGSSIISPDTNLLNIKGSHSKSKNLHFFFSNTVKITAFSKKNEN
IFNCDLIDSVDQIKNMPCLDLREFGKDVKPWHVETTEAARNNENTGFDALSHECTAKPLFPRVEVQSEQL
TVEEQIKRNRCYSDTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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