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Report for CCDS14500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14500.1 Public Homo sapiens X ARMCX5 24 110 108 CCDS HistoryNCBI Gene:64860Re-query CCDS DB by CCDS ID:14500.1Re-query CCDS DB by GeneID:64860See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14500.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000246174.6 ENSP00000246174.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000246174.6Link to Ensembl Protein Viewer:ENSP00000246174.2Re-query CCDS DB by Nucleotide ID:ENST00000246174Re-query CCDS DB by Protein ID:ENSP00000246174
Original member Current member EBI ENST00000372742.1 ENSP00000361827.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372742.1Link to Ensembl Protein Viewer:ENSP00000361827.1Re-query CCDS DB by Nucleotide ID:ENST00000372742Re-query CCDS DB by Protein ID:ENSP00000361827
Original member Current member EBI ENST00000473968.7 ENSP00000473737.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000473968.7Link to Ensembl Protein Viewer:ENSP00000473737.2Re-query CCDS DB by Nucleotide ID:ENST00000473968Re-query CCDS DB by Protein ID:ENSP00000473737
Original member Current member EBI ENST00000479502.2 ENSP00000474470.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000479502.2Link to Ensembl Protein Viewer:ENSP00000474470.2Re-query CCDS DB by Nucleotide ID:ENST00000479502Re-query CCDS DB by Protein ID:ENSP00000474470
Original member Current member EBI ENST00000477663.6 ENSP00000474484.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000477663.6Link to Ensembl Protein Viewer:ENSP00000474484.2Re-query CCDS DB by Nucleotide ID:ENST00000477663Re-query CCDS DB by Protein ID:ENSP00000474484
Original member Current member EBI ENST00000604957.1 ENSP00000474720.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000604957.1Link to Ensembl Protein Viewer:ENSP00000474720.1Re-query CCDS DB by Nucleotide ID:ENST00000604957Re-query CCDS DB by Protein ID:ENSP00000474720
Original member Current member NCBI NM_001168478.2 NP_001161950.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001168478.2Link to Protein Sequence:NP_001161950.1Re-query CCDS DB by Nucleotide ID:NM_001168478Re-query CCDS DB by Protein ID:NP_001161950Link to BLAST:NP_001161950.1
Original member Current member NCBI NM_001168479.2 NP_001161951.1 Accepted alive Link to Nucleotide Sequence:NM_001168479.2Link to Protein Sequence:NP_001161951.1Re-query CCDS DB by Nucleotide ID:NM_001168479Re-query CCDS DB by Protein ID:NP_001161951Link to BLAST:NP_001161951.1
Original member Current member NCBI NM_001168480.2 NP_001161952.1 Accepted alive Link to Nucleotide Sequence:NM_001168480.2Link to Protein Sequence:NP_001161952.1Re-query CCDS DB by Nucleotide ID:NM_001168480Re-query CCDS DB by Protein ID:NP_001161952Link to BLAST:NP_001161952.1
Original member Current member NCBI NM_001168482.2 NP_001161954.1 Accepted alive Link to Nucleotide Sequence:NM_001168482.2Link to Protein Sequence:NP_001161954.1Re-query CCDS DB by Nucleotide ID:NM_001168482Re-query CCDS DB by Protein ID:NP_001161954Link to BLAST:NP_001161954.1
Original member Current member NCBI NM_001168485.2 NP_001161957.1 Accepted alive Link to Nucleotide Sequence:NM_001168485.2Link to Protein Sequence:NP_001161957.1Re-query CCDS DB by Nucleotide ID:NM_001168485Re-query CCDS DB by Protein ID:NP_001161957Link to BLAST:NP_001161957.1
Original member Current member NCBI NM_022838.4 NP_073749.2 Accepted alive Link to Nucleotide Sequence:NM_022838.4Link to Protein Sequence:NP_073749.2Re-query CCDS DB by Nucleotide ID:NM_022838Re-query CCDS DB by Protein ID:NP_073749Link to BLAST:NP_073749.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161950.1 558 Q6P1M9 558 100% 0 0
NP_001161951.1 558 Q6P1M9 558 100% 0 0
NP_001161952.1 558 Q6P1M9 558 100% 0 0
NP_001161954.1 558 Q6P1M9 558 100% 0 0
NP_001161957.1 558 Q6P1M9 558 100% 0 0
NP_073749.2 558 Q6P1M9 558 100% 0 0

Chromosomal Locations for CCDS 14500.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 102602142 102603818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGTTGACTCTGGGACAGAAGCAAGGGCTAGAGGAAAGGCTGAGGCTGGCCTGCAAGATGGAATCAGTG
GTCCTGCCACTGCTAGAGTGAATGGTAAAACCCAGGCCGAGGCAGTGGCTGAGGCAGAACTGAAAACAGA
ATCAGTGACCCAGGCCAAAGCTGGTGATGGAGCAATGACCAGGACACATACAGTGACCTACAGGGAGGCT
ATGGCTGTGACAAGGGAAGTGATCAAGGTGGAAGATACAACTAAGACTAGAGTCATGGTTGAGACTAAGA
CAAAACCCCTGGCAGAACGCAGTATAGTGCCACAAACCAAGTCAAAGGCCATGCCTATGTCTAGGGTCAG
TACTGTAACCAAGTCTGAAGTCAAGGTTGTTGCTGTCATTGAGGCAAATATTAGGTCCTATGCCAAGTCA
CATGATAAGGCCAATACTGGGTCCAGACCTGACAGAAGGGAAGAGACCAGCATTGGGATGAAATCCAGTG
ATGAGGATGAAGAAAATATATGCTCCTGGTTCTGGACTGGAGAAGAGCCTAGTGTAGGGTCCTGGTTCTG
GCCTGAAGAAGAGACCTCTCTTCAAGTTTATAAGCCCCTACCTAAGATCCAGGAAAAGCCCAAGCCCACA
CACAAACCCACACTTACTATAAAACAAAAGGTAATAGCATGGTCAAGGGCCAGGTATATTGTCCTAGTTC
CAGTTGAAGGAGGGGAGCAATCCTTGCCTCCAGAAGGAAACTGGACCCTGGTTGAGACCTTGATTGAAAC
TCCTCTGGGGATTCGACCTTTGACCAAGATCCCACCTTATCATGGGCCTTATTACCAGACCTTAGCTGAG
ATCAAAAAACAGATTAGGCAAAGGGAAAAGTATGGGCCTAATCCGAAGGCCTGCCACTGCAAATCACGTG
GCTTTAGTTTAGAGCCTAAAGAGTTTGATAAACTTGTTGCCCTCCTTAAGTTAACTAAGGATCCTTTCAT
TCATGAAATAGCTACAATGATAATGGGCATCAGTCCTGCTTATCCATTTACTCAAGATATAATTCATGAT
GTAGGTATTACTGTTATGATTGAAAACTTGGTCAATAATCCCAATGTTAAAGAACACCCTGGAGCTTTAA
GTATGGTGGATGACAGCTCTGAGTCTTCCGAAGAACCAAAATCAGGGGAGTCATATATACATCAAGTTTG
TAAAGGCATAATCTCTTGCCCCTTGAACTCCCCTGTGCAGCTGGCTGGACTGAAATTACTAGGGCACTTG
AGTATAAAATTTGAAGATCACTATGTGATTACCAGTTATATTCCAGATTTCCTCACCTTGTTAAACAAGG
GAAGTGTCAAAACCAAGTTTTATGTTTTAAAAGTGTTTTCGTGTTTGTCTAAAAATCACGCCAATACAAG
AGAATTGATCAGTGCCAAAGTACTGTCATCATTGGTTGCACCCTTTAACAAGAATGAGTCAAAGGCCAAT
ATTCTTAATATTATTGAAATATTTGAGAATATAAATTTTCAGTTCAAAACAAAGGCAAAGCTATTTACCA
AGGAAAAGTTCACTAAATCTGAGCTTATTTCAATATTCCAGGAAGCAAAACAGTTTGGTCAGAAACTCCA
AGACTTAGCAGAGCACAGTGATCCCGAAGTGAGAGATAAAGTCATACGATTAATACTAAAACTCTGA

Translation (558 aa):
MVDSGTEARARGKAEAGLQDGISGPATARVNGKTQAEAVAEAELKTESVTQAKAGDGAMTRTHTVTYREA
MAVTREVIKVEDTTKTRVMVETKTKPLAERSIVPQTKSKAMPMSRVSTVTKSEVKVVAVIEANIRSYAKS
HDKANTGSRPDRREETSIGMKSSDEDEENICSWFWTGEEPSVGSWFWPEEETSLQVYKPLPKIQEKPKPT
HKPTLTIKQKVIAWSRARYIVLVPVEGGEQSLPPEGNWTLVETLIETPLGIRPLTKIPPYHGPYYQTLAE
IKKQIRQREKYGPNPKACHCKSRGFSLEPKEFDKLVALLKLTKDPFIHEIATMIMGISPAYPFTQDIIHD
VGITVMIENLVNNPNVKEHPGALSMVDDSSESSEEPKSGESYIHQVCKGIISCPLNSPVQLAGLKLLGHL
SIKFEDHYVITSYIPDFLTLLNKGSVKTKFYVLKVFSCLSKNHANTRELISAKVLSSLVAPFNKNESKAN
ILNIIEIFENINFQFKTKAKLFTKEKFTKSELISIFQEAKQFGQKLQDLAEHSDPEVRDKVIRLILKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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