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Report for CCDS4809.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4809.1 Public Homo sapiens 6 ARMC12 24 110 108 CCDS HistoryNCBI Gene:221481Re-query CCDS DB by CCDS ID:4809.1Re-query CCDS DB by GeneID:221481See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4809.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000288065.6 ENSP00000288065.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000288065.6Link to Ensembl Protein Viewer:ENSP00000288065.2Re-query CCDS DB by Nucleotide ID:ENST00000288065Re-query CCDS DB by Protein ID:ENSP00000288065
Original member Current member NCBI NM_145028.5 NP_659465.2 Accepted alive Link to Nucleotide Sequence:NM_145028.5Link to Protein Sequence:NP_659465.2Re-query CCDS DB by Nucleotide ID:NM_145028Re-query CCDS DB by Protein ID:NP_659465Link to BLAST:NP_659465.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659465.2 367 Q5T9G4-2 367 100% 0 0

Chromosomal Locations for CCDS 4809.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35737109 35737352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35738027 35738172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35738384 35738518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35747261 35747434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35747576 35747647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35748538 35748870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGGCAAGAGCATCCCCCAATACCTGGGGCAACTGGACATCCGCAAAAGCGTAGTCAGCCTGGCCACAG
GCGCCGGGGCGATCTACCTGCTCTACAAGGCCATCAAGGCTGGCATAAAATGCAAACCACCCCTCTGTAG
CAACTCACCCATCTGCATCGCCCGTGAGTGTCCGGGCCCTGGGGAGAGGGCTCTGCCCCAGGAGGCACCT
GCTCCCGAGGCCTCTGCTGTGGGAGGGCCCAAAGGCCTGGCAGTCGAGCGAGAGCGGCACGGGCGGGACT
CAGGTGAGCTCCGGAGGCTCCTCAACTCTTTGGAGTGCAAACAGGATGAGTATGCCAAGAGCATGATCCT
GCACAGTATCACTCGCTGTGTGTACTTGCTGGAGGCTGAGGCCTCTGCTTGTACTACGGATGACATCGTG
TTGCTGGGCTACATGCTGGATGACAAGGACAACAGTGTCAAAACCCAAGCTCTGAATACACTTAAAGCTT
TCTCTGGCATCAGAAAATTCAGGCTCAAAATCCAGGAACACTCCATCAAAGTACTCGAACTGATCTCCAC
CATCTGGGACACGGAACTGCACATTGCGGGCCTCAGACTCCTCAACAACCTTCCACTGCCCGACTATGTG
CATCCACAGCTGCGACGGGTGATGCCTGCCTTGATGGAGATCCTGCAGTCAGACTACATCCTGGCACAGG
TGCAAGCCGTACGACTGCTGAGCTACCTGGCACAGAAGAATGACCTTCTCTATGACATTCTCAACTGCCA
GGTTCACTCCAACTTCCTAAACCTGTTCCAGCCCACACAGTCAGGGAGTCTCCTGTATGAGGTACTGGTG
TTTGCTGAGCGGCTGAGTGAGGGCCGGAACGCACCCCACTACCACGTGGTGAAATGGCATTACAACGAAC
AGTCCCTGCATGAATCCCTCTTTGGGGAAGAGTCCCGACTGGCAGACCGACTACTTGCCCTGGTCATCCA
CCCTGAGGAAGATGTTCAGATCCAGGCCTGCAAGGTCATTGTCAGCCTGCAGTATCCCCAGGACTTGAGA
GCCCGGCCCTCCTCCTGCCAGCCCAGTCGTTCCTACTTTAAAAACACGGAATAA

Translation (367 aa):
MGKSIPQYLGQLDIRKSVVSLATGAGAIYLLYKAIKAGIKCKPPLCSNSPICIARECPGPGERALPQEAP
APEASAVGGPKGLAVERERHGRDSGELRRLLNSLECKQDEYAKSMILHSITRCVYLLEAEASACTTDDIV
LLGYMLDDKDNSVKTQALNTLKAFSGIRKFRLKIQEHSIKVLELISTIWDTELHIAGLRLLNNLPLPDYV
HPQLRRVMPALMEILQSDYILAQVQAVRLLSYLAQKNDLLYDILNCQVHSNFLNLFQPTQSGSLLYEVLV
FAERLSEGRNAPHYHVVKWHYNEQSLHESLFGEESRLADRLLALVIHPEEDVQIQACKVIVSLQYPQDLR
ARPSSCQPSRSYFKNTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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