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Report for CCDS34064.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34064.1 Public Homo sapiens 4 PCDH18 24 110 108 CCDS HistoryNCBI Gene:54510Re-query CCDS DB by CCDS ID:34064.1Re-query CCDS DB by GeneID:54510See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34064.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344876.9 ENSP00000355082.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000344876.9Link to Ensembl Protein Viewer:ENSP00000355082.4Re-query CCDS DB by Nucleotide ID:ENST00000344876Re-query CCDS DB by Protein ID:ENSP00000355082
Original member Current member NCBI NM_019035.5 NP_061908.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019035.5Link to Protein Sequence:NP_061908.1Re-query CCDS DB by Nucleotide ID:NM_019035Re-query CCDS DB by Protein ID:NP_061908Link to BLAST:NP_061908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061908.1 1135 Q9HCL0-1 1135 100% 0 0

Chromosomal Locations for CCDS 34064.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137521029 137521696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137528478 137528641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137528732 137528820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137529602 137532088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3408 nt):
ATGCACCAAATGAATGCTAAAATGCACTTTAGGTTTGTTTTTGCACTTCTGATAGTATCTTTCAACCACG
ATGTACTGGGCAAGAATTTGAAATACAGGATTTATGAGGAACAGAGGGTTGGATCAGTAATTGCAAGACT
ATCAGAGGATGTGGCTGATGTTTTATTGAAGCTTCCTAATCCTTCTACTGTTCGATTTCGAGCCATGCAG
AGGGGAAATTCTCCTCTACTTGTAGTAAACGAGGATAATGGGGAAATCAGCATAGGGGCTACAATTGACC
GTGAACAACTGTGCCAGAAAAACTTGAACTGTTCCATAGAGTTTGATGTGATCACTCTACCCACAGAGCA
TCTGCAGCTTTTCCATATTGAAGTTGAAGTGCTGGATATTAATGACAATTCTCCCCAGTTTTCAAGATCT
CTCATACCTATTGAGATATCTGAGAGTGCAGCAGTTGGGACTCGCATTCCCCTGGACAGTGCATTTGATC
CAGATGTTGGGGAAAATTCCCTCCACACATACTCGCTCTCTGCCAATGATTTTTTTAATATCGAGGTTCG
GACCAGGACTGATGGAGCCAAGTATGCAGAACTCATAGTGGTCAGAGAGTTAGATCGGGAGCTGAAGTCA
AGCTACGAGCTTCAGCTCACTGCCTCAGACATGGGAGTACCTCAGAGGTCTGGCTCATCCATACTAAAAA
TAAGCATTTCAGACTCCAATGACAACAGCCCTGCTTTTGAGCAGCAATCTTATATAATACAACTCTTAGA
AAACTCCCCGGTTGGCACTTTGCTCTTAGATCTGAATGCCACGGATCCAGATGAGGGCGCTAATGGGAAA
ATTGTATATTCCTTCAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTTAAAATTGATTCTGAAAGAG
GACATTTGACTCTTTTCAAGCAAGTGGATTATGAAATCACCAAATCCTATGAGATTGATGTTCAGGCTCA
AGATTTGGGTCCAAATTCAATCCCAGCCCATTGCAAAATTATAATTAAGGTTGTGGATGTTAATGACAAT
AAACCTGAAATTAACATCAACCTCATGTCCCCTGGAAAAGAAGAAATATCTTATATTTTTGAAGGGGATC
CTATTGATACATTTGTTGCTTTGGTCAGAGTTCAGGACAAGGATTCTGGGCTGAATGGAGAAATAGTTTG
TAAGCTTCATGGACATGGTCACTTTAAACTTCAGAAGACATATGAAAACAATTATTTAATCTTAACTAAT
GCCACACTGGATAGAGAAAAGAGATCTGAGTATAGTTTGACTGTAATCGCTGAGGACAGGGGGACACCCA
GTCTCTCTACAGTGAAACATTTTACAGTTCAAATCAATGATATCAATGACAATCCACCCCACTTCCAGAG
AAGCCGATATGAATTTGTAATTTCAGAAAATAACTCACCAGGGGCATATATCACCACTGTTACAGCCACA
GATCCTGATCTTGGAGAAAATGGGCAAGTGACATACACCATCTTGGAGAGTTTTATTCTAGGAAGTTCCA
TAACTACATATGTAACCATTGACCCATCTAATGGAGCCATCTATGCCCTCAGAATCTTTGATCATGAAGA
AGTGAGTCAGATCACTTTTGTGGTAGAAGCAAGAGATGGAGGAAGCCCGAAGCAACTGGTAAGCAATACC
ACAGTTGTGCTCACCATCATTGACGAAAATGACAACGTTCCTGTGGTTATAGGGCCTGCATTGCGTAATA
ATACGGCAGAAATCACCATTCCCAAAGGGGCTGAAAGTGGCTTTCATGTCACAAGAATAAGGGCAATTGA
CAGAGACTCTGGTGTGAATGCTGAACTCAGCTGCGCCATAGTAGCAGGTAATGAGGAGAATATCTTCATA
ATTGATCCACGATCATGTGACATCCATACCAACGTTAGCATGGATTCTGTTCCCTACACAGAATGGGAGC
TGTCAGTTATCATTCAGGACAAAGGCAATCCTCAGCTACATACCAAAGTCCTTCTGAAGTGCATGATCTT
TGAATATGCAGAGTCGGTGACAAGTACAGCAATGACTTCAGTAAGCCAGGCATCCTTGGATGTCTCCATG
ATAATAATTATTTCCTTAGGAGCAATTTGTGCAGTGTTGCTGGTTATTATGGTGCTATTTGCAACTAGGT
GTAACCGCGAGAAGAAAGACACTAGATCCTATAACTGCAGGGTGGCCGAATCAACTTACCAGCACCACCC
AAAAAGGCCATCCCGGCAGATTCACAAAGGGGACATCACATTGGTGCCTACCATAAATGGCACTCTGCCC
ATCAGATCTCATCACAGATCGTCTCCATCTTCATCTCCTACCTTAGAAAGAGGGCAGATGGGCAGCCGGC
AGAGTCACAACAGTCACCAGTCACTCAACAGTTTGGTGACAATCTCATCAAACCACGTGCCAGAGAATTT
CTCATTAGAACTCACCCACGCCACTCCTGCTGTTGAGCAGGTCTCTCAGCTTCTTTCAATGCTTCACCAG
GGGCAATATCAGCCAAGACCAAGTTTTCGAGGAAACAAATATTCCAGGAGCTACAGATATGCCCTTCAAG
ACATGGACAAATTTAGCTTGAAAGACAGTGGCCGTGGTGACAGTGAGGCAGGAGACAGTGATTATGATTT
GGGGCGAGATTCTCCAATAGATAGGCTGTTGGGTGAAGGATTCAGCGACCTGTTTCTCACAGATGGAAGA
ATTCCAGCAGCTATGAGACTCTGCACGGAGGAGTGCAGGGTCCTGGGACACTCTGACCAGTGCTGGATGC
CACCACTGCCCTCACCGTCTTCTGATTATAGGAGTAACATGTTCATTCCAGGGGAAGAATTCCCAACGCA
ACCCCAGCAGCAGCATCCACATCAGAGTCTTGAGGATGACGCTCAGCCTGCAGATTCCGGTGAAAAGAAG
AAGAGTTTTTCCACCTTTGGAAAGGACTCCCCAAACGATGAGGACACTGGGGATACCAGCACATCATCTC
TGCTCTCGGAAATGAGCAGTGTGTTCCAGCGTCTCTTACCGCCTTCCCTGGACACCTATTCTGAATGCAG
TGAGGTGGATCGGTCCAACTCCCTGGAGCGCAGGAAGGGACCCTTGCCAGCCAAAACTGTGGGTTACCCA
CAGGGGGTAGCGGCATGGGCAGCCAGTACGCATTTTCAAAATCCCACCACCAACTGTGGGCCGCCACTTG
GAACTCACTCCAGTGTGCAGCCTTCTTCAAAATGGCTGCCAGCCATGGAGGAGATCCCTGAAAATTATGA
GGAAGATGATTTTGACAATGTGCTCAACCACCTCAATGATGGGAAACACGAACTCATGGATGCCAGTGAA
CTGGTGGCAGAGATTAACAAACTGCTTCAAGATGTCCGCCAGAGCTAG

Translation (1135 aa):
MHQMNAKMHFRFVFALLIVSFNHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPNPSTVRFRAMQ
RGNSPLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSPQFSRS
LIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFFNIEVRTRTDGAKYAELIVVRELDRELKS
SYELQLTASDMGVPQRSGSSILKISISDSNDNSPAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGK
IVYSFSSHVSPKIMETFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDN
KPEININLMSPGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGAYITTVTAT
DPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSPKQLVSNT
TVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTRIRAIDRDSGVNAELSCAIVAGNEENIFI
IDPRSCDIHTNVSMDSVPYTEWELSVIIQDKGNPQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSM
IIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLP
IRSHHRSSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQ
GQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFLTDGR
IPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPTQPQQQHPHQSLEDDAQPADSGEKK
KSFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRLLPPSLDTYSECSEVDRSNSLERRKGPLPAKTVGYP
QGVAAWAASTHFQNPTTNCGPPLGTHSSVQPSSKWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASE
LVAEINKLLQDVRQS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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