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Report for CCDS13818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13818.1 Public Homo sapiens 22 SLC2A11 24 110 108 CCDS HistoryNCBI Gene:66035Re-query CCDS DB by CCDS ID:13818.1Re-query CCDS DB by GeneID:66035See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398356.6 ENSP00000381399.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398356.6Link to Ensembl Protein Viewer:ENSP00000381399.2Re-query CCDS DB by Nucleotide ID:ENST00000398356Re-query CCDS DB by Protein ID:ENSP00000381399
Original member Current member NCBI NM_030807.5 NP_110434.3 Accepted alive Link to Nucleotide Sequence:NM_030807.5Link to Protein Sequence:NP_110434.3Re-query CCDS DB by Nucleotide ID:NM_030807Re-query CCDS DB by Protein ID:NP_110434Link to BLAST:NP_110434.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_110434.3 503 Q9BYW1-4 503 100% 0 0

Chromosomal Locations for CCDS 13818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 23857490 23857531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23862104 23862202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23868481 23868641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23875117 23875241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877042 23877171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23877721 23877869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882459 23882646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23882759 23882869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883772 23883873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23883949 23884024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884302 23884429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 23884649 23884849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGAGGATGAACTGGAGCCGTCCTTACGGCCTCGGACGCAGATTCAGGGCAGGATCCTGCTCCTGACCA
TCTGCGCTGCCGGCATTGGTGGGACTTTTCAGTTTGGCTATAACCTCTCTATCATCAATGCCCCGACCTT
GCACATTCAGGAATTCACCAATGAGACATGGCAGGCGCGTACTGGAGAGCCACTGCCCGATCACCTAGTC
CTGCTTATGTGGTCCCTCATCGTGTCTCTGTATCCCCTGGGAGGCCTCTTTGGAGCACTGCTTGCAGGTC
CCTTGGCCATCACGCTGGGAAGGAAGAAGTCCCTCCTGGTGAATAACATCTTTGTGGTGTCAGCAGCAAT
CCTGTTTGGATTCAGCCGCAAAGCAGGCTCCTTTGAGATGATCATGCTGGGAAGACTGCTCGTGGGAGTC
AATGCAGGTGTGAGCATGAACATCCAGCCCATGTACCTGGGGGAGAGCGCCCCTAAGGAGCTCCGAGGAG
CTGTGGCCATGAGCTCAGCCATCTTTACGGCTCTGGGGATCGTGATGGGACAGGTGGTCGGACTCAGGGA
GCTCCTAGGTGGCCCTCAGGCCTGGCCCCTGCTGCTGGCCAGCTGCCTGGTGCCCGGGGCGCTCCAGCTC
GCCTCCCTGCCTCTGCTCCCTGAAAGCCCGCGCTACCTCCTCATTGACTGTGGAGACACCGAGGCCTGCC
TGGCAGCACTACGGCGGCTCCGGGGCTCCGGGGACTTGGCAGGGGAGCTGGAGGAGCTGGAGGAGGAGCG
CGCTGCCTGCCAGGGCTGCCGTGCCCGGCGCCCATGGGAGCTGTTCCAGCATCGGGCCCTGAGGAGACAG
GTGACAAGCCTCGTGGTTCTGGGCAGTGCCATGGAGCTCTGCGGGAATGACTCGGTGTACGCCTACGCCT
CCTCCGTGTTCCGGAAGGCAGGAGTGCCGGAAGCGAAGATCCAGTACGCGATCATCGGGACTGGGAGCTG
CGAGCTGCTCACGGCGGTTGTTAGTTGTGTGGTAATCGAGAGGGTGGGTCGGCGCGTGCTGCTCATCGGT
GGGTACAGCCTGATGACCTGCTGGGGGAGCATCTTCACTGTGGCCCTGTGCCTGCAGAGCTCCTTCCCCT
GGACACTCTACCTGGCCATGGCCTGCATCTTTGCCTTCATCCTCAGCTTTGGCATTGGCCCTGCCGGAGT
GACGGGGATCCTGGCCACAGAGCTGTTTGACCAGATGGCCAGGCCTGCTGCCTGCATGGTCTGCGGGGCG
CTCATGTGGATCATGCTCATCCTGGTCGGCCTGGGATTTCCCTTTATCATGGAGGCCTTGTCCCACTTCC
TCTATGTCCCTTTCCTTGGTGTCTGTGTCTGTGGGGCCATCTACACTGGCCTGTTCCTTCCTGAGACCAA
AGGCAAGACCTTCCAAGAGATCTCCAAGGAATTACACAGACTCAACTTCCCCAGGCGGGCCCAGGGCCCC
ACGTGGAGGAGCCTGGAGGTTATCCAGTCAACAGAACTCTAG

Translation (503 aa):
MEDELEPSLRPRTQIQGRILLLTICAAGIGGTFQFGYNLSIINAPTLHIQEFTNETWQARTGEPLPDHLV
LLMWSLIVSLYPLGGLFGALLAGPLAITLGRKKSLLVNNIFVVSAAILFGFSRKAGSFEMIMLGRLLVGV
NAGVSMNIQPMYLGESAPKELRGAVAMSSAIFTALGIVMGQVVGLRELLGGPQAWPLLLASCLVPGALQL
ASLPLLPESPRYLLIDCGDTEACLAALRRLRGSGDLAGELEELEEERAACQGCRARRPWELFQHRALRRQ
VTSLVVLGSAMELCGNDSVYAYASSVFRKAGVPEAKIQYAIIGTGSCELLTAVVSCVVIERVGRRVLLIG
GYSLMTCWGSIFTVALCLQSSFPWTLYLAMACIFAFILSFGIGPAGVTGILATELFDQMARPAACMVCGA
LMWIMLILVGLGFPFIMEALSHFLYVPFLGVCVCGAIYTGLFLPETKGKTFQEISKELHRLNFPRRAQGP
TWRSLEVIQSTEL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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