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Report for CCDS31900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31900.1 Public Homo sapiens 12 HVCN1 24 110 108 CCDS HistoryNCBI Gene:84329Re-query CCDS DB by CCDS ID:31900.1Re-query CCDS DB by GeneID:84329See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242607.13 ENSP00000242607.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242607.13Link to Ensembl Protein Viewer:ENSP00000242607.8Re-query CCDS DB by Nucleotide ID:ENST00000242607Re-query CCDS DB by Protein ID:ENSP00000242607
Original member Current member EBI ENST00000356742.9 ENSP00000349181.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356742.9Link to Ensembl Protein Viewer:ENSP00000349181.5Re-query CCDS DB by Nucleotide ID:ENST00000356742Re-query CCDS DB by Protein ID:ENSP00000349181
Original member Current member EBI ENST00000620084.4 ENSP00000479812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620084.4Link to Ensembl Protein Viewer:ENSP00000479812.1Re-query CCDS DB by Nucleotide ID:ENST00000620084Re-query CCDS DB by Protein ID:ENSP00000479812
Original member Current member NCBI NM_001040107.2 NP_001035196.1 Accepted alive Link to Nucleotide Sequence:NM_001040107.2Link to Protein Sequence:NP_001035196.1Re-query CCDS DB by Nucleotide ID:NM_001040107Re-query CCDS DB by Protein ID:NP_001035196Link to BLAST:NP_001035196.1
Original member Current member NCBI NM_032369.4 NP_115745.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032369.4Link to Protein Sequence:NP_115745.2Re-query CCDS DB by Nucleotide ID:NM_032369Re-query CCDS DB by Protein ID:NP_115745Link to BLAST:NP_115745.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035196.1 273 Q96D96-1 273 100% 0 0
NP_115745.2 273 Q96D96-1 273 100% 0 0

Chromosomal Locations for CCDS 31900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 110649410 110649475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110650168 110650280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110651217 110651448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110655234 110655338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110661164 110661448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 110683225 110683245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGCCACCTGGGACGAAAAGGCAGTCACCCGCAGGGCCAAGGTGGCTCCCGCTGAGAGGATGAGCAAGT
TCTTAAGGCACTTCACGGTCGTGGGAGACGACTACCATGCCTGGAACATCAACTACAAGAAATGGGAGAA
TGAAGAGGAGGAGGAGGAGGAGGAGCAGCCACCACCCACACCAGTCTCAGGCGAGGAAGGCAGAGCTGCA
GCCCCTGACGTTGCCCCTGCCCCTGGCCCCGCACCCAGGGCCCCCCTTGACTTCAGGGGCATGTTGAGGA
AACTGTTCAGCTCCCACAGGTTTCAGGTCATCATCATCTGCTTGGTGGTTCTGGATGCCCTCCTGGTGCT
TGCTGAGCTCATCCTGGACCTGAAGATCATCCAGCCCGACAAGAATAACTATGCTGCCATGGTATTCCAC
TACATGAGCATCACCATCTTGGTCTTTTTTATGATGGAGATCATCTTTAAATTATTTGTCTTCCGCCTGG
AGTTCTTTCACCACAAGTTTGAGATCCTGGATGCCGTCGTGGTGGTGGTCTCATTCATCCTCGACATTGT
CCTCCTGTTCCAGGAGCACCAGTTTGAGGCTCTGGGCCTGCTGATTCTGCTCCGGCTGTGGCGGGTGGCC
CGGATCATCAATGGGATTATCATCTCAGTTAAGACACGTTCAGAACGGCAACTCTTAAGGTTAAAACAGA
TGAATGTACAATTGGCCGCCAAGATTCAACACCTTGAGTTCAGCTGCTCTGAGAAGGAACAAGAAATTGA
AAGACTTAACAAACTATTGCGACAGCATGGACTTCTTGGTGAAGTGAACTAG

Translation (273 aa):
MATWDEKAVTRRAKVAPAERMSKFLRHFTVVGDDYHAWNINYKKWENEEEEEEEEQPPPTPVSGEEGRAA
APDVAPAPGPAPRAPLDFRGMLRKLFSSHRFQVIIICLVVLDALLVLAELILDLKIIQPDKNNYAAMVFH
YMSITILVFFMMEIIFKLFVFRLEFFHHKFEILDAVVVVVSFILDIVLLFQEHQFEALGLLILLRLWRVA
RIINGIIISVKTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLLGEVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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