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Report for CCDS41855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41855.1 Public Homo sapiens 12 OGFOD2 24 110 108 CCDS HistoryNCBI Gene:79676Re-query CCDS DB by CCDS ID:41855.1Re-query CCDS DB by GeneID:79676See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41855.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397389.6 ENSP00000380544.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397389.6Link to Ensembl Protein Viewer:ENSP00000380544.2Re-query CCDS DB by Nucleotide ID:ENST00000397389Re-query CCDS DB by Protein ID:ENSP00000380544
Original member Current member NCBI NM_024623.3 NP_078899.1 Accepted alive Link to Nucleotide Sequence:NM_024623.3Link to Protein Sequence:NP_078899.1Re-query CCDS DB by Nucleotide ID:NM_024623Re-query CCDS DB by Protein ID:NP_078899Link to BLAST:NP_078899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078899.1 290 Q6N063-2 290 100% 0 0

Chromosomal Locations for CCDS 41855.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 122976393 122976401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122976654 122976767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122976871 122976970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122978442 122978569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122978753 122979010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 122979083 122979346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGTTGAGCTTGAGCAGGAGGTGGAGCGGCGGCAGCGGCTGGGGCAGGAGTCAGCAGCTAGGAAAGCCC
TCATCGCGAGTTCCTACCACCCGGCACGGCCTGAGGTCTACGACTCACTGCAGGATGCAGCTCTGGCCCC
CGAGTTCCTGGCCGTGACTGAGTACAGCGTGTCCCCAGACGCAGACCTCAAGGGCCTTCTCCAGCGGCTG
GAGACAGTATCGGAGGAGAAGCGCATCTACCGGGTGCCTGTTTTCACAGCGCCCTTCTGCCAGGCCCTGC
TGGAAGAGCTGGAGCACTTCGAGCAATCGGACATGCCTAAGGGGAGGCCCAACACCATGAACAACTACGG
GGTGCTGCTGCACGAGCTCGGGCTGGACGAGCCGCTGATGACACCACTGCGGGAGCGCTTCCTGCAGCCG
CTGATGGCCCTGCTGTACCCTGACTGTGGCGGGGGCCGGCTCGACAGCCACCGGGCCTTTGTGGTCAAAT
ACGCACCGGGCCAGGACCTGGAGCTGGGCTGCCACTATGATAATGCCGAGCTCACCCTCAATGTGGCCTT
GGGCAAGGTCTTCACAGGGGGCGCCCTGTATTTTGGGGGCCTCTTCCAGGCACCCACAGCCCTGACGGAG
CCCCTGGAGGTGGAGCACGTGGTGGGCCAGGGTGTCCTCCACCGTGGCGGCCAGCTGCATGGAGCCCGGC
CCTTGGGCACTGGTGAGCGTTGGAACCTTGTCGTCTGGCTCCGAGCCTCTGCTGTGCGCAACAGCCTCTG
TCCCATGTGCTGCCGTGAGCCCGACCTGGTGGACGATGAGGGCTTCGGTGATGGCTTCACCCGAGAGGAG
CCCGCCACGGTGGATGTATGTGCGCTCACCTGA

Translation (290 aa):
MVELEQEVERRQRLGQESAARKALIASSYHPARPEVYDSLQDAALAPEFLAVTEYSVSPDADLKGLLQRL
ETVSEEKRIYRVPVFTAPFCQALLEELEHFEQSDMPKGRPNTMNNYGVLLHELGLDEPLMTPLRERFLQP
LMALLYPDCGGGRLDSHRAFVVKYAPGQDLELGCHYDNAELTLNVALGKVFTGGALYFGGLFQAPTALTE
PLEVEHVVGQGVLHRGGQLHGARPLGTGERWNLVVWLRASAVRNSLCPMCCREPDLVDDEGFGDGFTREE
PATVDVCALT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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