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Report for CCDS33470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33470.1 Public Homo sapiens 20 IFT52 24 110 108 CCDS HistoryNCBI Gene:51098Re-query CCDS DB by CCDS ID:33470.1Re-query CCDS DB by GeneID:51098See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373030.8 ENSP00000362121.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373030.8Link to Ensembl Protein Viewer:ENSP00000362121.3Re-query CCDS DB by Nucleotide ID:ENST00000373030Re-query CCDS DB by Protein ID:ENSP00000362121
Original member Current member EBI ENST00000373039.4 ENSP00000362130.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373039.4Link to Ensembl Protein Viewer:ENSP00000362130.4Re-query CCDS DB by Nucleotide ID:ENST00000373039Re-query CCDS DB by Protein ID:ENSP00000362130
Original member Current member NCBI NM_001303458.3 NP_001290387.1 Accepted alive Link to Nucleotide Sequence:NM_001303458.3Link to Protein Sequence:NP_001290387.1Re-query CCDS DB by Nucleotide ID:NM_001303458Re-query CCDS DB by Protein ID:NP_001290387Link to BLAST:NP_001290387.1
Original member Current member NCBI NM_016004.5 NP_057088.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016004.5Link to Protein Sequence:NP_057088.2Re-query CCDS DB by Nucleotide ID:NM_016004Re-query CCDS DB by Protein ID:NP_057088Link to BLAST:NP_057088.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290387.1 437 Q9Y366 437 100% 0 0
NP_057088.2 437 Q9Y366 437 100% 0 0

Chromosomal Locations for CCDS 33470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 43594699 43594817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43596435 43596522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43603760 43603889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43604183 43604258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43605002 43605073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43613850 43613976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43618940 43619026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43620857 43620925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43623891 43624045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43635926 43636013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43637145 43637253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43642479 43642624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43646936 43646983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1314 nt):
ATGGAGAAAGAGCTGCGGAGCACCATTCTTTTCAATGCCTACAAAAAGGAGATATTTACCACCAACAATG
GCTACAAATCCATGCAGAAAAAACTTCGGAGTAATTGGAAGATTCAGAGCTTAAAAGATGAAATCACATC
TGAGAAGTTAAATGGAGTGAAACTGTGGATTACAGCTGGGCCAAGGGAAAAATTTACTGCAGCTGAGTTT
GAAATCCTGAAGAAATATCTTGACACTGGTGGAGATGTCTTTGTGATGCTAGGAGAAGGTGGAGAATCCA
GATTTGACACCAATATTAACTTTTTACTAGAAGAATATGGAATCATGGTTAATAATGATGCTGTGGTTAG
AAATGTATATCACAAATATTTCCATCCTAAAGAAGCTCTAGTTTCCAGTGGAGTCTTGAACAGGGAAATT
AGCCGAGCTGCAGGAAAGGCTGTGCCTGGGATCATTGATGAGGAAAGCAGTGGAAACAATGCCCAGGCTC
TCACCTTTGTGTATCCTTTTGGTGCCACATTGAGTGTCATGAAACCAGCAGTGGCGGTTCTGTCTACAGG
TTCTGTCTGCTTCCCACTTAACAGACCCATTTTGGCTTTCTATCACTCAAAGAACCAAGGTGGGAAGCTG
GCAGTGCTTGGTTCATGTCACATGTTCAGTGATCAATATTTGGACAAAGAAGAAAACAGCAAAATCATGG
ATGTTGTTTTCCAGTGGCTCACGACAGGAGACATCCACCTAAACCAGATTGATGCTGAGGACCCAGAGAT
TTCTGACTACATGATGCTGCCCTACACAGCCACCCTATCAAAGCGGAATCGAGAGTGTCTCCAGGAGAGT
GATGAGATCCCAAGGGACTTTACCACCCTCTTCGACCTGTCCATCTTCCAGCTGGATACCACCTCCTTCC
ACAGCGTCATCGAGGCTCACGAGCAGCTAAATGTGAAACATGAACCACTCCAGCTCATCCAGCCTCAGTT
TGAGACGCCGCTGCCAACCCTTCAGCCTGCGGTTTTTCCTCCCAGTTTCCGGGAGTTACCACCTCCTCCT
CTGGAGCTATTTGATTTAGATGAAACGTTCTCCTCTGAGAAGGCACGGCTGGCTCAGATTACCAATAAGT
GTACTGAAGAAGACCTGGAATTTTATGTCAGGAAGTGTGGTGATATTCTTGGAGTAACCAGTAAACTACC
AAAGGACCAACAGGATGCCAAACATATCCTTGAGCACGTCTTCTTCCAAGTGGTGGAGTTCAAGAAATTG
AACCAGGAACATGACATCGATACAAGTGAAACAGCATTCCAGAACAATTTCTGA

Translation (437 aa):
MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQSLKDEITSEKLNGVKLWITAGPREKFTAAEF
EILKKYLDTGGDVFVMLGEGGESRFDTNINFLLEEYGIMVNNDAVVRNVYHKYFHPKEALVSSGVLNREI
SRAAGKAVPGIIDEESSGNNAQALTFVYPFGATLSVMKPAVAVLSTGSVCFPLNRPILAFYHSKNQGGKL
AVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTGDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQES
DEIPRDFTTLFDLSIFQLDTTSFHSVIEAHEQLNVKHEPLQLIQPQFETPLPTLQPAVFPPSFRELPPPP
LELFDLDETFSSEKARLAQITNKCTEEDLEFYVRKCGDILGVTSKLPKDQQDAKHILEHVFFQVVEFKKL
NQEHDIDTSETAFQNNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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