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Report for CCDS5109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5109.1 Public Homo sapiens 6 CALHM4 24 110 108 CCDS HistoryNCBI Gene:221301Re-query CCDS DB by CCDS ID:5109.1Re-query CCDS DB by GeneID:221301See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5109.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368597.6 ENSP00000357586.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368597.6Link to Ensembl Protein Viewer:ENSP00000357586.2Re-query CCDS DB by Nucleotide ID:ENST00000368597Re-query CCDS DB by Protein ID:ENSP00000357586
Original member Current member NCBI NM_001256889.3 NP_001243818.1 Accepted alive Link to Nucleotide Sequence:NM_001256889.3Link to Protein Sequence:NP_001243818.1Re-query CCDS DB by Nucleotide ID:NM_001256889Re-query CCDS DB by Protein ID:NP_001243818Link to BLAST:NP_001243818.1
Original member Current member NCBI NM_153036.5 NP_694581.1 Accepted alive Link to Nucleotide Sequence:NM_153036.5Link to Protein Sequence:NP_694581.1Re-query CCDS DB by Nucleotide ID:NM_153036Re-query CCDS DB by Protein ID:NP_694581Link to BLAST:NP_694581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243818.1 128 Q5JW98-2 128 100% 0 0
NP_694581.1 128 Q5JW98-2 128 100% 0 0

Chromosomal Locations for CCDS 5109.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116557825 116558211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGCTGGGTTGGATTTTGATCACCTTGGCAACCATTGCTGCCTTAGTCTCCTGCTGTGTGGCAAAGTGCT
GCTCTCCCCTCACCTCTCTGCAACATTGCTACTGGACCAGCCACCTCCAGAATGAGAGAGAACTCTTTGA
ACAAGCAGCAGAGCAGCACTCTCGGCTCCTCATGATGCATCGCATAAAGAAGCTATTTGGCTTCATTCCC
GGGAGTGAAGACGTCAAACACATCCGCATTCCTTCTTGTCAGGACTGGAAAGATATTTCAGTACCCACTC
TTTTATGCATGGGTGATGACTTGCAAGGTCACTATAGCTTCCTTGGAAATAGGGTGGATGAGGATAATGA
GGAAGACAGATCAAGAGGTATTGAATTAAAACCTTGA

Translation (128 aa):
MLGWILITLATIAALVSCCVAKCCSPLTSLQHCYWTSHLQNERELFEQAAEQHSRLLMMHRIKKLFGFIP
GSEDVKHIRIPSCQDWKDISVPTLLCMGDDLQGHYSFLGNRVDEDNEEDRSRGIELKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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