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Report for CCDS86035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86035.1 Public Homo sapiens 1 SEC16B 24 110 108 CCDS HistoryNCBI Gene:89866Re-query CCDS DB by CCDS ID:86035.1Re-query CCDS DB by GeneID:89866See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000464631.6 ENSP00000431727.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464631.6Link to Ensembl Protein Viewer:ENSP00000431727.2Re-query CCDS DB by Nucleotide ID:ENST00000464631Re-query CCDS DB by Protein ID:ENSP00000431727
Original member Current member NCBI NM_001356499.2 NP_001343428.1 Accepted alive Link to Nucleotide Sequence:NM_001356499.2Link to Protein Sequence:NP_001343428.1Re-query CCDS DB by Nucleotide ID:NM_001356499Re-query CCDS DB by Protein ID:NP_001343428Link to BLAST:NP_001343428.1

Chromosomal Locations for CCDS 86035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 177946320 177946531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177947825 177947942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177951914 177951995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177954279 177954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177958132 177958362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177958840 177958975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177960342 177960403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177960791 177960942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177961590 177961734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177964171 177964279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177965047 177965167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177965893 177966005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 177967683 177967981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1878 nt):
ATGGAACTTTGGGCTCCCCAGAGGCTGCCCCAGACACGAGGGAAGGCCACAGCACCCTCAAAGGATCCAG
ACCGAGGGTTTCGGAGAGATGGACATCATCGGCCTGTCCCTCACTCTTGGCACAATGGAGAGAGGTTTCA
CCAATGGCAAGACAACCGTGGGAGCCCCCAGCCACAGCAGGAGCCCAGGGCAGACCATCAGCAGCAGCCC
CATTATGCATCCAGGCCAGGGGACTGGCATCAGCCTGTGTCTGGAGTTGACTATTACGAAGGTGGTTATC
GCAATCAGTTGTATTCAAGGCCAGGTTATGAGAATTCATATCAGAGCTATCAGTCTCCCACAATGAGGGA
GGAATATGCTTATGGAAGTTATTACTATCATGGACACCCACAGTGGCTGCAGGAAGAAAGAGTGCCAAGG
CAACGGAGTCCTTATATCTGGCACGAAGATTACCGAGAGCAAAAGTACCTTGATGAACATCATTATGAAA
ACCAGCACAGTCCATTTGGAACAAATAGTGAGACCCACTTCCAATCTAACAGTAGGAACCCTTGTAAAGA
CAGCCCTGCTTCCAACTCTGGACAGGAGTGGCCGGGGGAGCTGTTTCCAGGGAGCCTGCTTGCTGAGGCC
CAGAAAAATAAGCCATCATTGGCTAGTGAGTCCAACCTTCTCCAGCAGCGTGAGTCTGGTCTCAGCTCCA
GCAGCTATGAGCTCAGTCAGTACATCAGAGATGCCCCGGAGCGGGATGATCCCCCAGCTTCAGCAGCTTG
GAGTCCAGTTCAGGCTGAAGATGTCTCCTCAGCTGGTCCCAAAGCACCCATGAAGTTCTACATCCCTCAT
GTTCCTGTGAGTTTCGGGCCAGGAGGTCAGCTGGTGCATGTAGGTCCCAGCTCTCCCACTGACGGGCAAG
CAGCCCTTGTTGAACTGCACAGCATGGAGGTTATTCTTAATGATTCCGAAGAGCAAGAGGAGATGAGAAG
TTTCTCAGGACCCTTGATTAGGGAAGATGTACATAAGGTGGATATTATGACGTTTTGCCAGCAGAAAGCA
GCTCAGAGCTGCAAATCTGAGACACTGGGGAGCAGAGACTCAGCTCTACTGTGGCAGCTCTTGGTTCTCC
TTTGTCGCCAGAATGGGTCCATGGTGGGGTCTGACATCGCTGAGCTGCTAATGCAAGACTGCAAGAAGCT
GGAGAAGTACAAGCGGCAGCCCCCTGTGGCCAACCTCATCAACCTGACCGATGAGGACTGGCCAGTGCTG
AGCTCTGGGACCCCGAACCTGCTCACGGGAGAGATCCCCCCCAGTGTGGAGACACCTGCGCAGATCGTGG
AGAAATTCACTAGGCTGCTCTACTATGGAAGGAAGAAGGAAGCCTTGGAGTGGGCCATGAAGAACCACTT
GTGGGGCCATGCTTTGTTCCTGTCCAGCAAGATGGACCCACAGACCTACAGCTGGGTCATGAGTGGCTTC
ACCAGCACGCTGGCGCTCAATGACCCACTGCAGACCCTCTTCCAGCTCATGTCGGGGAGGATTCCACAGG
CAGCCACGTGTTGTGGAGAAAAGCAGTGGGGAGACTGGAGGCCTCACTTGGCTGTGATTCTGTCGAATCA
GGCTGGGGACCCAGAGCTGTATCAGCGTGCGATTGTTGCCATTGGGGACACCCTGGCTGGGAAGGGGCTT
GTGGAGGCAGCTCACTTCTGCTATCTCATGGCTCACGTGCCCTTTGGCCACTACACCGTGAAGACAGACC
ATCTGGTCTTGCTGGGCAGCAGCCACAGGTATGCGACCTGGGAGAAAGGAAACAGTAAGGACATTTTCCA
AGGGACTGTTTTAGCCCTTGTTGGGTTTTATGGATCCATTTTTCATTTTCTCATGTGA

Translation (625 aa):
MELWAPQRLPQTRGKATAPSKDPDRGFRRDGHHRPVPHSWHNGERFHQWQDNRGSPQPQQEPRADHQQQP
HYASRPGDWHQPVSGVDYYEGGYRNQLYSRPGYENSYQSYQSPTMREEYAYGSYYYHGHPQWLQEERVPR
QRSPYIWHEDYREQKYLDEHHYENQHSPFGTNSETHFQSNSRNPCKDSPASNSGQEWPGELFPGSLLAEA
QKNKPSLASESNLLQQRESGLSSSSYELSQYIRDAPERDDPPASAAWSPVQAEDVSSAGPKAPMKFYIPH
VPVSFGPGGQLVHVGPSSPTDGQAALVELHSMEVILNDSEEQEEMRSFSGPLIREDVHKVDIMTFCQQKA
AQSCKSETLGSRDSALLWQLLVLLCRQNGSMVGSDIAELLMQDCKKLEKYKRQPPVANLINLTDEDWPVL
SSGTPNLLTGEIPPSVETPAQIVEKFTRLLYYGRKKEALEWAMKNHLWGHALFLSSKMDPQTYSWVMSGF
TSTLALNDPLQTLFQLMSGRIPQAATCCGEKQWGDWRPHLAVILSNQAGDPELYQRAIVAIGDTLAGKGL
VEAAHFCYLMAHVPFGHYTVKTDHLVLLGSSHRYATWEKGNSKDIFQGTVLALVGFYGSIFHFLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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