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Report for CCDS2177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2177.1 Public Homo sapiens 2 R3HDM1 24 110 108 CCDS HistoryNCBI Gene:23518Re-query CCDS DB by CCDS ID:2177.1Re-query CCDS DB by GeneID:23518See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2177.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264160.8 ENSP00000264160.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000264160.8Link to Ensembl Protein Viewer:ENSP00000264160.4Re-query CCDS DB by Nucleotide ID:ENST00000264160Re-query CCDS DB by Protein ID:ENSP00000264160
Original member Current member NCBI NM_001354199.2 NP_001341128.1 Accepted alive Link to Nucleotide Sequence:NM_001354199.2Link to Protein Sequence:NP_001341128.1Re-query CCDS DB by Nucleotide ID:NM_001354199Re-query CCDS DB by Protein ID:NP_001341128Link to BLAST:NP_001341128.1
Original member Current member NCBI NM_015361.4 NP_056176.2 Accepted alive Link to Nucleotide Sequence:NM_015361.4Link to Protein Sequence:NP_056176.2Re-query CCDS DB by Nucleotide ID:NM_015361Re-query CCDS DB by Protein ID:NP_056176Link to BLAST:NP_056176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341128.1 1099 Q15032-1 1099 100% 0 0
NP_056176.2 1099 Q15032-1 1099 100% 0 0

Chromosomal Locations for CCDS 2177.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 135604846 135605016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616152 135616193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135616668 135616757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135621494 135621608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135622654 135622732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631718 135631777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135631861 135632001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135635890 135635998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135636088 135636183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638618 135638655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638739 135638789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135638896 135639122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135641536 135641790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135645379 135645527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135651733 135652032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135661270 135661393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135675332 135675486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135680173 135680324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135709433 135709536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135710059 135710231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135715550 135715694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135721924 135722006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135722469 135722553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 135723937 135724292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGAGGATGTCTGATACTGTTACTGTAAAAGATGAAACTGCAACAATGAAGGATTTGGAGGCAGAAGTGA
AAGATACAACCAGAGTTGAAAATCTTATCAAATCAGAAAACTATGGGAAGATTTTGGTAGAGAAGAATGA
ACATTGTATTGAGAACAATATAGATTTGCAGCGGCCATTGCAGTCATTTGGACAGACAGGAAAAAGGTCT
AAGTCAAGCTCAAAGTTAAAGCTAGTTCGGAGCCTTGCAGTGTGTGAAGAATCTCCACCACCCCCTGCAC
CAGAGATATCACAGGAGAACCAGGAGAAAATTCAGATCCAGTTAACACAATCATTTGAGAAAGAAGAGAA
GCCCTCAAAAGATGAAGCAGAAAAAGAAAAGGCCAGTGATAAGTTGCCCAGAAAAATGTTATCAAGAGAT
TCCAGTCAAGAATACACTGATTCAACTGGCATAGATCTACATGAATTTTTAGTAAATACATTAAAAAACA
ATCCCAGGGACAGAATGATGCTGCTGAAATTGGAACAAGAAATTTTAGATTTCATTGGTAATAATGAGTC
TCCACGTAAAAAATTCCCCCCAATGACATCTTACCATAGGATGCTATTACACAGAGTAGCCGCTTACTTT
GGATTAGACCACAATGTTGATCAGAGTGGGAAGTCTGTCATAGTAAACAAAACTAGCAATACAAGAATAC
CTGATCAGAAATTTAATGAACATATTAAGGATGATAAAGGTGAAGACTTTCAGAAACGTTATATCCTCAA
GAGAGATAACTCTAGCTTTGACAAAGATGATAACCAGATGAGAATACGTTTGAAAGATGACAGAAGAAGC
AAATCTATAGAAGAAAGAGAAGAAGAGTACCAGAGAGCCAGAGACCGAATATTTTCCCAAGATTCCCTGT
GTTCCCAAGAGAATTACATTATTGACAAAAGACTCCAAGACGAGGATGCCAGTAGTACCCAGCAGAGGCG
CCAGATATTTAGAGTTAATAAAGATGCTTCAGGGAGATCTACAAATAGCCATCAAAGCAGCACTGAGAAT
GAGTTGAAGTACTCGGAACCACGACCCTGGAGCAGCACAGATTCAGACAGCTCTCTTCGAAACCTGAAAC
CTGCTGTAACCAAAGCCAGCAGCTTCAGTGGAATCTCAGTCCTGACAAGAGGTGATAGTTCTGGAAGCAG
CAAAAGCATAGGCAGGCTTTCAAAAACAGGTTCTGAGTCTTCTGGTAGTGTAGGGTCATCTACAGGCTCT
CTTTCTCACATCCAGCAGCCTCTTCCAGGTACAGCTCTCAGCCAGTCTTCTCATGGCGCACCTGTCGTCT
ATCCAACTGTCAGCACTCATAGTTCTCTTTCCTTTGATGGTGGCCTAAATGGGCAAGTCGCATCTCCTAG
CACTAGCTTCTTTTTGCTTCCCTTGGAAGCGGCAGGCATACCACCTGGCAGTATTCTGATCAACCCACAA
ACAGGTCAGCCCTTCATAAACCCAGATGGGAGTCCAGTTGTGTATAATCCTCCTATGACTCAACAACCAG
TTAGATCCCAAGTGCCTGGACCTCCACAGCCACCTCTGCCAGCCCCACCTCAACAACCAGCAGCTAATCA
CATTTTCTCACAGGATAACCTAGGGTCTCAGTTTAGCCACATGAGTCTTGCTCGCCAGCCATCTGCTGAT
GGTTCTGACCCTCATGCCGCCATGTTCCAGTCCACTGTGGTTCTTCAGTCTCCACAGCAGTCTGGTTATA
TCATGACAGCAGCCCCTCCACCACATCCTCCTCCACCGCCACCACCACCACCTCCTCCTCCTCCCCTACC
ACCTGGGCAGCCAGTCCCTACTGCTGGATATCCTGCCTCTGGTCATCCTGTCAGCCAGCCTGTGCTCCAG
CAGCAGGGATATATTCAGCAGCCATCACCACAGATGCCAGCCTGTTATTGCGCTCCAGGCCACTATCACT
CCAGCCAACCTCAGTATCGCCCAGTCCCTTCTGTTCATTACAATTCACATCTAAACCAACCACTGCCACA
ACCTGCGCAGCAGACAGGTTATCAAGTTATACCCAACCAGCAGCAAAACTACCAAGGAATAGTTGGAGTT
CAGCAACCCCAGAGTCAGAGCCTAGTCAGTGGCCAACCCAACAGCATTGGAAATCAGATTCAAGGAGTGG
TCATCCCCTATACTTCAGTGCCAACATATCAGGTTTCACTGCCTCAAGGTTCTCAAGGAATTCCCCATCA
GACTTATCAACAGCCTGTTATGTTCCCTAATCAGTCTAATCAAGGATCTATGCCCACAACAGGAATGCCT
GTTTACTATAGTGTCATTCCACCTGGTCAACAAAACAATTTAAGCTCTTCAGTAGGTTACCTGCAACATC
CAGGATCAGAACAAGTACAATTTCCTCGAACCACTTCACCATGCAGTTCCCAGCAGCTTCAAGGCCACCA
ATGTACAGCTGGACCACCACCGCCACCTGGTGGGGGGATGGTGATGATGCAGCTCAGTGTACCAAACAAT
CCACAATCTTGTGCCCACTCACCCCCGCAGTGGAAACAAAACAAATATTACTGTGATCACCAGAGAGGAC
AGAAGTGTGTAGAATTTAGCAGTGTAGACAATATTGTCCAGCACAGCCCTCAACTCAGTAGCCCCATTAT
TTCACCAGCTCAGTCGCCAGCACCAGCTCAGCTGTCCACCCTGAAAACTGTACGTCCCTCTGGACCACCA
CTTTCCATCATGCCCCAATTTTCTAGACCTTTTGTCCCCGGGCAAGGAGATTCCAGGTATCCATTACTTG
GCCAGCCACTGCAGTACAATCCTCCTGCTGTTCTGCACGGACACATTCCAAACCAACAGGGTCAGCCTGG
CAGCAGGCATGGAAACCGAGGAAGGAGACAAGCTAAAAAAGCTGCATCCACAGACCTTGGAGCAGGAGAA
ACAGTTGTTGGGAAGGTCTTGGAAATTACTGAACTACCAGATGGAATAACTCGCATGGAAGCTGAAAAGC
TTTTTGGGGAACTCTTTAAAATTGGCGCCAAGATCCGGTGGCTCCGGGACCCCCAGTCCCAACCACGTCG
TCACCCCCTCTGCTGTGGCAGTGGGGACAACACTGCCAACCCTGAACGCTCTAAACCCAGTGACTTGGCC
TCCACCTACACCGTCTTAGCCACATTCCCCTCCATTTCAGCTGCACAGAATGCACTGAAGAAACAAATTA
ACTCAGTTAACAAGTTTAAGCTGAGAACAAGCAAGAAGCACTATGACTTTCACATTTTGGAAAGGGCAAG
TTCTCAGTAA

Translation (1099 aa):
MRMSDTVTVKDETATMKDLEAEVKDTTRVENLIKSENYGKILVEKNEHCIENNIDLQRPLQSFGQTGKRS
KSSSKLKLVRSLAVCEESPPPPAPEISQENQEKIQIQLTQSFEKEEKPSKDEAEKEKASDKLPRKMLSRD
SSQEYTDSTGIDLHEFLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPMTSYHRMLLHRVAAYF
GLDHNVDQSGKSVIVNKTSNTRIPDQKFNEHIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRS
KSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFRVNKDASGRSTNSHQSSTEN
ELKYSEPRPWSSTDSDSSLRNLKPAVTKASSFSGISVLTRGDSSGSSKSIGRLSKTGSESSGSVGSSTGS
LSHIQQPLPGTALSQSSHGAPVVYPTVSTHSSLSFDGGLNGQVASPSTSFFLLPLEAAGIPPGSILINPQ
TGQPFINPDGSPVVYNPPMTQQPVRSQVPGPPQPPLPAPPQQPAANHIFSQDNLGSQFSHMSLARQPSAD
GSDPHAAMFQSTVVLQSPQQSGYIMTAAPPPHPPPPPPPPPPPPPLPPGQPVPTAGYPASGHPVSQPVLQ
QQGYIQQPSPQMPACYCAPGHYHSSQPQYRPVPSVHYNSHLNQPLPQPAQQTGYQVIPNQQQNYQGIVGV
QQPQSQSLVSGQPNSIGNQIQGVVIPYTSVPTYQVSLPQGSQGIPHQTYQQPVMFPNQSNQGSMPTTGMP
VYYSVIPPGQQNNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCTAGPPPPPGGGMVMMQLSVPNN
PQSCAHSPPQWKQNKYYCDHQRGQKCVEFSSVDNIVQHSPQLSSPIISPAQSPAPAQLSTLKTVRPSGPP
LSIMPQFSRPFVPGQGDSRYPLLGQPLQYNPPAVLHGHIPNQQGQPGSRHGNRGRRQAKKAASTDLGAGE
TVVGKVLEITELPDGITRMEAEKLFGELFKIGAKIRWLRDPQSQPRRHPLCCGSGDNTANPERSKPSDLA
STYTVLATFPSISAAQNALKKQINSVNKFKLRTSKKHYDFHILERASSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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