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Report for CCDS53301.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53301.1 Public Homo sapiens 1 SCMH1 24 110 108 CCDS HistoryNCBI Gene:22955Re-query CCDS DB by CCDS ID:53301.1Re-query CCDS DB by GeneID:22955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53301.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372596.5 ENSP00000361677.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372596.5Link to Ensembl Protein Viewer:ENSP00000361677.1Re-query CCDS DB by Nucleotide ID:ENST00000372596Re-query CCDS DB by Protein ID:ENSP00000361677
Original member Current member NCBI NM_001172218.2 NP_001165689.1 Accepted alive Link to Nucleotide Sequence:NM_001172218.2Link to Protein Sequence:NP_001165689.1Re-query CCDS DB by Nucleotide ID:NM_001172218Re-query CCDS DB by Protein ID:NP_001165689Link to BLAST:NP_001165689.1
Original member Current member NCBI NM_001172220.2 NP_001165691.1 Accepted alive Link to Nucleotide Sequence:NM_001172220.2Link to Protein Sequence:NP_001165691.1Re-query CCDS DB by Nucleotide ID:NM_001172220Re-query CCDS DB by Protein ID:NP_001165691Link to BLAST:NP_001165691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165689.1 577 Q96GD3-5 577 100% 0 0
NP_001165691.1 577 Q96GD3-5 577 100% 0 0

Chromosomal Locations for CCDS 53301.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 41028194 41028319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41028584 41028726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41037362 41037541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41046407 41046598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41048690 41048890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41070595 41070721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41075219 41075451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41113283 41113526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41116922 41117010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 41142878 41143076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGAAATTGGAAGCACAGGACCCCAGGAACACCACATCCACCTGTATTGCCACAGTAGTTGGACTGACAG
GTGCCCGCCTTCGCCTGCGCCTTGATGGGAGCGACAACAAAAATGACTTCTGGCGGCTGGTTGACTCAGC
TGAAATCCAGCCTATTGGGAACTGTGAAAAGAATGGGGGTATGCTACAGCCACCTCTTGGATTTCGGCTG
AATGCGTCTTCTTGGCCCATGTTCCTTTTGAAGACGCTAAATGGAGCAGAGATGGCTCCCATCAGGATTT
TCCACAAGGAGCCACCATCGCCTTCCCACAACTTCTTCAAAATGGGAATGAAGCTAGAAGCTGTGGACAG
GAAGAACCCTCATTTCATTTGCCCAGCCACTATTGGGGAGGTTCGGGGCTCAGAGGTGCTTGTCACTTTT
GATGGGTGGCGAGGGGCCTTTGACTACTGGTGCCGCTTCGACTCCCGAGACATCTTCCCTGTGGGCTGGT
GTTCCTTGACTGGAGACAACCTGCAGCCTCCTGGCACCAAAGTTGTGATTCCAAAGAATCCCTATCCTGC
CTCCGATGTGAATACTGAGAAGCCCAGCATCCACAGCAGCACCAAAACTGTCTTGGAACATCAACCAGGG
CAGAGGGGGCGTAAACCAGGAAAGAAGCGGGGCCGGACACCCAAGACCCTAATTTCCCATCCCATCTCTG
CCCCATCCAAGACAGCTGAACCTTTGAAATTCCCAAAGAAGAGAGGTCCCAAACCTGGCAGCAAGAGGAA
ACCTCGGACTTTGCTGAACCCACCACCTGCCTCACCAACAACCAGCACTCCTGAACCGGATACCAGCACT
GTACCCCAGGATGCTGCCACCATCCCCAGCTCAGCCATGCAGGCCCCAACAGTTTGTATCTACTTGAACA
AGAATGGCAGCACAGGCCCCCACTTAGATAAGAAGAAGGTCCAGCAACTCCCTGACCATTTTGGACCAGC
CCGTGCCTCTGTGGTGTTGCAGCAGGCTGTCCAGGCCTGTATCGACTGTGCTTATCACCAGAAAACCGTC
TTCAGCTTCCTCAAGCAAGGCCATGGTGGTGAGGTTATCTCAGCCGTGTTTGACCGGGAACAGCATACCC
TCAACCTCCCAGCAGTCAACAGCATCACCTACGTCCTCCGCTTCCTGGAGAAACTCTGCCACAACCTTCG
TAGTGACAATCTGTTTGGCAACCAGCCCTTTACACAGACTCACTTGTCACTCACTGCCATAGAGTACAGC
CACAGCCACGACAGGTACCTACCAGGTGAAACCTTTGTCCTGGGGAATAGTCTGGCCCGCTCCTTGGAAC
CACACTCAGACTCAATGGACTCTGCCTCAAATCCCACCAACCTTGTCAGCACCTCCCAAAGGCACCGGCC
CTTGCTTTCATCCTGTGGCCTCCCACCAAGCACTGCCTCAGCTGTGCGCAGGCTATGCTCCAGGGGGTCG
GACCGATACCTGGAGAGCCGCGATGCCTCTCGACTGAGTGGCCGGGACCCCTCCTCATGGACAGTCGAGG
ATGTGATGCAGTTTGTCCGGGAAGCTGATCCTCAGCTTGGACCCCACGCTGACCTGTTTCGCAAACACGA
GATCGATGGCAAGGCCCTGCTGCTGCTGCGCAGTGACATGATGATGAAGTACATGGGCCTGAAGCTGGGG
CCTGCACTCAAGCTCTCCTACCACATTGACCGGCTGAAGCAGGGCAAGTTCTGA

Translation (577 aa):
MKLEAQDPRNTTSTCIATVVGLTGARLRLRLDGSDNKNDFWRLVDSAEIQPIGNCEKNGGMLQPPLGFRL
NASSWPMFLLKTLNGAEMAPIRIFHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTF
DGWRGAFDYWCRFDSRDIFPVGWCSLTGDNLQPPGTKVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPG
QRGRKPGKKRGRTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTST
VPQDAATIPSSAMQAPTVCIYLNKNGSTGPHLDKKKVQQLPDHFGPARASVVLQQAVQACIDCAYHQKTV
FSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLTAIEYS
HSHDRYLPGETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLPPSTASAVRRLCSRGS
DRYLESRDASRLSGRDPSSWTVEDVMQFVREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLG
PALKLSYHIDRLKQGKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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