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Report for CCDS54840.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54840.1 Public Homo sapiens 5 TTC23L 24 110 108 CCDS HistoryNCBI Gene:153657Re-query CCDS DB by CCDS ID:54840.1Re-query CCDS DB by GeneID:153657See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 54840.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000505624.6 ENSP00000422188.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505624.6Link to Ensembl Protein Viewer:ENSP00000422188.1Re-query CCDS DB by Nucleotide ID:ENST00000505624Re-query CCDS DB by Protein ID:ENSP00000422188
Original member Current member NCBI NM_001386172.1 NP_001373101.1 Accepted alive Link to Nucleotide Sequence:NM_001386172.1Link to Protein Sequence:NP_001373101.1Re-query CCDS DB by Nucleotide ID:NM_001386172Re-query CCDS DB by Protein ID:NP_001373101Link to BLAST:NP_001373101.1
Original member Current member NCBI NM_144725.4 NP_653326.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144725.4Link to Protein Sequence:NP_653326.3Re-query CCDS DB by Nucleotide ID:NM_144725Re-query CCDS DB by Protein ID:NP_653326Link to BLAST:NP_653326.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373101.1 361 Q6PF05-1 361 100% 0 0
NP_653326.3 361 Q6PF05-1 361 100% 0 0

Chromosomal Locations for CCDS 54840.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34840672 34840739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34845487 34845673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34850185 34850308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34862898 34863054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34864437 34864562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34866892 34867069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34868905 34869013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34880181 34880308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34896770 34896778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGCAAGCCAGCCCCATCCGTATCCCAACTGTTAGCAATGACATCGACTGGGATTTCTGCTTCCATATGT
CACAGCAAACCGAGATCCCAGCTCACCAGCAAACAGATGAGTTGTATCCCACTGGTGGGTGTGGAGAGAG
TGAAGAGGAAACTAAAGCTAAAGAGAAGGAGAAGGCCATAGACTGTATGTCTCATCCCAAAGAGAAATTA
GCCCAATCCCAGAAGAAAGTAGCTCAGCTGATTAAGGAAAAAATGAATACTCAAGCAAACAAGGAGCTGA
TTCGATGTGTCATCCTTTCTCGGATTATTTTTGGGGACCATCACTGGAAATGTGCACGAGCTCTGGCCAA
CCTAGCTTATGGCTACTTGACACTGAGAGGCCTCCCAGTTCAGGCCAAGAAACATGCTACATCAGCCAAG
AATACACTGTTGACCTGGAAGGCAAATACGACCTCAAATAAGGAGAAAGAGGAAATCCTGGAAGCTCTGG
TCAAGCTGTACTACACTCTGGGCGTGGCCTGGCTCCTGCAGAACCGTGGCAGAGAAGCCTATTTCAACCT
GCAGAAGGCAGAGAGAAACATGAAGGAGCTGAAAGAATTATATAAAGGAGGTGTTTGTGAATTACAAGTC
TCTGAGAACGACCTAACACTTGCTTTGGGCAGAGCCTCCTTGGCCATCCACAGACTGAACCTAGCTCTGG
CATACTTTGAAAAGGCAATTGGCGATGTTATTGCTGCCAAGGGTGATAGGACGTCAGATCTGATCAGCCT
GTACGAGGAAGCTGCTCAGATAGAGCAGCTGAGGAGGAACCACAACCAGGCCATCCAGTACTTGCAGCAG
GCTCATTCTGTCTGTGTTTCTTTGTTCACTGAAGTCAGCCCCAAAACTGCAGAAATGAGTGCGTTACTGG
CCAAAGCTTATGCCATGTCTGGAGAGGCCCAGCACAGGGATGCTGTTGAGATATATTTCATAAGAAGTAT
CAATGCATATCGAGCAACATTGGGCTCAGAGGATTTTGAAACACTGAGCACCACTGAAGAATTTTGCAAA
TGGCTTGTCCAAAATGGAGAAAAACAGGACAAGTAG

Translation (361 aa):
MQASPIRIPTVSNDIDWDFCFHMSQQTEIPAHQQTDELYPTGGCGESEEETKAKEKEKAIDCMSHPKEKL
AQSQKKVAQLIKEKMNTQANKELIRCVILSRIIFGDHHWKCARALANLAYGYLTLRGLPVQAKKHATSAK
NTLLTWKANTTSNKEKEEILEALVKLYYTLGVAWLLQNRGREAYFNLQKAERNMKELKELYKGGVCELQV
SENDLTLALGRASLAIHRLNLALAYFEKAIGDVIAAKGDRTSDLISLYEEAAQIEQLRRNHNQAIQYLQQ
AHSVCVSLFTEVSPKTAEMSALLAKAYAMSGEAQHRDAVEIYFIRSINAYRATLGSEDFETLSTTEEFCK
WLVQNGEKQDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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