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Report for CCDS6524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6524.1 Public Homo sapiens 9 LINGO2 24 110 108 CCDS HistoryNCBI Gene:158038Re-query CCDS DB by CCDS ID:6524.1Re-query CCDS DB by GeneID:158038See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6524.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379992.6 ENSP00000369328.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379992.6Link to Ensembl Protein Viewer:ENSP00000369328.1Re-query CCDS DB by Nucleotide ID:ENST00000379992Re-query CCDS DB by Protein ID:ENSP00000369328
Original member Current member EBI ENST00000698399.1 ENSP00000513694.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000698399.1Link to Ensembl Protein Viewer:ENSP00000513694.1Re-query CCDS DB by Nucleotide ID:ENST00000698399Re-query CCDS DB by Protein ID:ENSP00000513694
Original member Current member EBI ENST00000698400.1 ENSP00000513695.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698400.1Link to Ensembl Protein Viewer:ENSP00000513695.1Re-query CCDS DB by Nucleotide ID:ENST00000698400Re-query CCDS DB by Protein ID:ENSP00000513695
Original member Current member EBI ENST00000698401.1 ENSP00000513696.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698401.1Link to Ensembl Protein Viewer:ENSP00000513696.1Re-query CCDS DB by Nucleotide ID:ENST00000698401Re-query CCDS DB by Protein ID:ENSP00000513696
Original member Current member EBI ENST00000698402.1 ENSP00000513697.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698402.1Link to Ensembl Protein Viewer:ENSP00000513697.1Re-query CCDS DB by Nucleotide ID:ENST00000698402Re-query CCDS DB by Protein ID:ENSP00000513697
Original member Current member EBI ENST00000698403.1 ENSP00000513698.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698403.1Link to Ensembl Protein Viewer:ENSP00000513698.1Re-query CCDS DB by Nucleotide ID:ENST00000698403Re-query CCDS DB by Protein ID:ENSP00000513698
Original member Current member NCBI NM_001258282.3 NP_001245211.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258282.3Link to Protein Sequence:NP_001245211.1Re-query CCDS DB by Nucleotide ID:NM_001258282Re-query CCDS DB by Protein ID:NP_001245211Link to BLAST:NP_001245211.1
Original member Current member NCBI NM_001354574.2 NP_001341503.1 Accepted alive Link to Nucleotide Sequence:NM_001354574.2Link to Protein Sequence:NP_001341503.1Re-query CCDS DB by Nucleotide ID:NM_001354574Re-query CCDS DB by Protein ID:NP_001341503Link to BLAST:NP_001341503.1
Original member Current member NCBI NM_001354575.2 NP_001341504.1 Accepted alive Link to Nucleotide Sequence:NM_001354575.2Link to Protein Sequence:NP_001341504.1Re-query CCDS DB by Nucleotide ID:NM_001354575Re-query CCDS DB by Protein ID:NP_001341504Link to BLAST:NP_001341504.1
Original member Current member NCBI NM_152570.4 NP_689783.1 Accepted alive Link to Nucleotide Sequence:NM_152570.4Link to Protein Sequence:NP_689783.1Re-query CCDS DB by Nucleotide ID:NM_152570Re-query CCDS DB by Protein ID:NP_689783Link to BLAST:NP_689783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245211.1 606 Q7L985 606 100% 0 0
NP_001341503.1 606 Q7L985 606 100% 0 0
NP_001341504.1 606 Q7L985 606 100% 0 0
NP_689783.1 606 Q7L985 606 100% 0 0

Chromosomal Locations for CCDS 6524.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 27948851 27950671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1821 nt):
ATGCTTCACACGGCCATATCATGCTGGCAGCCATTCCTGGGTCTGGCTGTGGTGTTAATCTTCATGGGAT
CCACCATTGGCTGCCCCGCTCGCTGTGAGTGCTCTGCCCAGAACAAATCTGTTAGCTGTCACAGAAGGCG
ATTGATCGCCATCCCAGAGGGCATTCCCATCGAAACCAAAATCTTGGACCTCAGTAAAAACAGGCTAAAA
AGCGTCAACCCTGAAGAATTCATATCATATCCTCTGCTGGAAGAGATAGACTTGAGTGACAACATCATTG
CCAATGTGGAACCAGGAGCATTCAACAATCTCTTTAACCTGCGTTCCCTCCGCCTAAAAGGCAATCGTCT
AAAGCTGGTCCCTTTGGGAGTATTCACGGGGCTGTCCAATCTCACTAAGCTTGACATTAGTGAGAATAAG
ATTGTCATTTTACTAGACTACATGTTCCAAGATCTACATAACCTGAAGTCTCTAGAAGTGGGGGACAATG
ATTTGGTTTATATATCACACAGGGCATTCAGTGGGCTTCTTAGCTTGGAGCAGCTCACCCTGGAGAAATG
CAACTTAACAGCAGTACCAACAGAAGCCCTCTCCCACCTCCGCAGCCTCATCAGCCTGCATCTGAAGCAT
CTCAATATCAACAATATGCCTGTGTATGCCTTTAAAAGATTGTTCCACCTGAAACACCTAGAGATTGACT
ATTGGCCTTTACTGGATATGATGCCTGCCAATAGCCTCTACGGTCTCAACCTCACATCCCTTTCAGTCAC
CAACACCAATCTGTCTACTGTACCCTTCCTTGCCTTTAAACACCTGGTATACCTGACTCACCTTAACCTC
TCCTACAATCCCATCAGCACTATTGAAGCAGGCATGTTCTCTGACCTGATCCGCCTTCAGGAGCTTCATA
TAGTGGGGGCCCAGCTTCGCACCATTGAGCCTCACTCCTTCCAAGGGCTCCGCTTCCTACGCGTGCTCAA
TGTGTCTCAGAACCTGCTGGAAACTTTGGAAGAGAATGTCTTCTCCTCCCCTAGGGCTCTGGAGGTCTTG
AGCATTAACAACAACCCTCTGGCCTGTGACTGCCGCCTTCTCTGGATCTTGCAGCGACAGCCCACCCTGC
AGTTTGGTGGCCAGCAACCTATGTGTGCTGGCCCAGACACCATCCGTGAGAGGTCTTTCAAGGATTTCCA
TAGCACTGCCCTTTCTTTTTACTTTACCTGCAAAAAACCCAAAATCCGTGAAAAGAAGTTGCAGCATCTG
CTAGTAGATGAAGGGCAGACAGTCCAGCTAGAATGCAGTGCAGATGGAGACCCGCAGCCTGTGATTTCCT
GGGTGACACCCCGAAGGCGTTTCATCACCACCAAGTCCAATGGAAGAGCCACCGTGTTGGGTGATGGCAC
CTTGGAAATCCGCTTTGCCCAGGATCAAGACAGCGGGATGTATGTTTGCATCGCTAGCAATGCTGCTGGG
AATGATACCTTCACAGCCTCCTTAACTGTGAAAGGATTCGCTTCAGATCGTTTTCTTTATGCGAACAGGA
CCCCTATGTACATGACCGACTCCAATGACACCATTTCCAATGGCACCAATGCCAATACTTTTTCCCTGGA
CCTTAAAACAATACTGGTGTCTACAGCTATGGGCTGCTTCACATTCCTGGGAGTGGTTTTATTTTGTTTT
CTTCTCCTTTTTGTGTGGAGCCGAGGGAAAGGCAAGCACAAAAACAGCATTGACCTTGAGTATGTGCCCA
GAAAAAACAATGGTGCTGTTGTGGAAGGGGAGGTAGCTGGACCCAGGAGGTTCAACATGAAAATGATTTG
A

Translation (606 aa):
MLHTAISCWQPFLGLAVVLIFMGSTIGCPARCECSAQNKSVSCHRRRLIAIPEGIPIETKILDLSKNRLK
SVNPEEFISYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENK
IVILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLISLHLKH
LNINNMPVYAFKRLFHLKHLEIDYWPLLDMMPANSLYGLNLTSLSVTNTNLSTVPFLAFKHLVYLTHLNL
SYNPISTIEAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLRFLRVLNVSQNLLETLEENVFSSPRALEVL
SINNNPLACDCRLLWILQRQPTLQFGGQQPMCAGPDTIRERSFKDFHSTALSFYFTCKKPKIREKKLQHL
LVDEGQTVQLECSADGDPQPVISWVTPRRRFITTKSNGRATVLGDGTLEIRFAQDQDSGMYVCIASNAAG
NDTFTASLTVKGFASDRFLYANRTPMYMTDSNDTISNGTNANTFSLDLKTILVSTAMGCFTFLGVVLFCF
LLLFVWSRGKGKHKNSIDLEYVPRKNNGAVVEGEVAGPRRFNMKMI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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