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Report for CCDS73555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73555.1 Public Homo sapiens 13 POLR1D 24 110 108 CCDS HistoryNCBI Gene:51082Re-query CCDS DB by CCDS ID:73555.1Re-query CCDS DB by GeneID:51082See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621089.2 ENSP00000478213.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621089.2Link to Ensembl Protein Viewer:ENSP00000478213.1Re-query CCDS DB by Nucleotide ID:ENST00000621089Re-query CCDS DB by Protein ID:ENSP00000478213
Original member Current member EBI ENST00000637071.1 ENSP00000489713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637071.1Link to Ensembl Protein Viewer:ENSP00000489713.1Re-query CCDS DB by Nucleotide ID:ENST00000637071Re-query CCDS DB by Protein ID:ENSP00000489713
Original member Current member EBI ENST00000637180.1 ENSP00000490619.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000637180.1Link to Ensembl Protein Viewer:ENSP00000490619.1Re-query CCDS DB by Nucleotide ID:ENST00000637180Re-query CCDS DB by Protein ID:ENSP00000490619
Original member Current member EBI ENST00000693488.1 ENSP00000508846.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693488.1Link to Ensembl Protein Viewer:ENSP00000508846.1Re-query CCDS DB by Nucleotide ID:ENST00000693488Re-query CCDS DB by Protein ID:ENSP00000508846
Original member Current member NCBI NM_001206559.2 NP_001193488.1 Accepted alive Link to Nucleotide Sequence:NM_001206559.2Link to Protein Sequence:NP_001193488.1Re-query CCDS DB by Nucleotide ID:NM_001206559Re-query CCDS DB by Protein ID:NP_001193488Link to BLAST:NP_001193488.1

Chromosomal Locations for CCDS 73555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27648437 27648453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27665686 27665953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGGGACCCATGGGTTGGATGAAGTGTCCTCTTGCTAGCACCAATAAAAGATTTCTAATTAACACAATTA
AAAACACATTGCCCTCTCATAAAGAGCAAGACCATGAACAAAAAGAGGGCGATAAGGAACCAGCGAAGAG
CCAGGCCCAGAAAGAAGAAAACCCGAAGAAACACAGAAGCCATCCTTACAAGCACAGCTTCCGCGCTCGA
GGTTCCGCCAGTTACTCCCCGCCACGAAAGCGGAGCAGCCAGGACAAGTACGAAAAGCGGTCCAACCGGC
GGTGA

Translation (94 aa):
MGPMGWMKCPLASTNKRFLINTIKNTLPSHKEQDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRAR
GSASYSPPRKRSSQDKYEKRSNRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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