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Report for CCDS75193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75193.1 Public Homo sapiens 4 PCDH18 24 110 108 CCDS HistoryNCBI Gene:54510Re-query CCDS DB by CCDS ID:75193.1Re-query CCDS DB by GeneID:54510See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75193.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412923.6 ENSP00000390688.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412923.6Link to Ensembl Protein Viewer:ENSP00000390688.2Re-query CCDS DB by Nucleotide ID:ENST00000412923Re-query CCDS DB by Protein ID:ENSP00000390688
Original member Current member NCBI NM_001300828.2 NP_001287757.1 Accepted alive Link to Nucleotide Sequence:NM_001300828.2Link to Protein Sequence:NP_001287757.1Re-query CCDS DB by Nucleotide ID:NM_001300828Re-query CCDS DB by Protein ID:NP_001287757Link to BLAST:NP_001287757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287757.1 1134 Q9HCL0-2 1134 100% 0 0

Chromosomal Locations for CCDS 75193.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 137521029 137521696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137528478 137528641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137528732 137528817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 137529602 137532088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3405 nt):
ATGCACCAAATGAATGCTAAAATGCACTTTAGGTTTGTTTTTGCACTTCTGATAGTATCTTTCAACCACG
ATGTACTGGGCAAGAATTTGAAATACAGGATTTATGAGGAACAGAGGGTTGGATCAGTAATTGCAAGACT
ATCAGAGGATGTGGCTGATGTTTTATTGAAGCTTCCTAATCCTTCTACTGTTCGATTTCGAGCCATGCAG
AGGGGAAATTCTCCTCTACTTGTAGTAAACGAGGATAATGGGGAAATCAGCATAGGGGCTACAATTGACC
GTGAACAACTGTGCCAGAAAAACTTGAACTGTTCCATAGAGTTTGATGTGATCACTCTACCCACAGAGCA
TCTGCAGCTTTTCCATATTGAAGTTGAAGTGCTGGATATTAATGACAATTCTCCCCAGTTTTCAAGATCT
CTCATACCTATTGAGATATCTGAGAGTGCAGCAGTTGGGACTCGCATTCCCCTGGACAGTGCATTTGATC
CAGATGTTGGGGAAAATTCCCTCCACACATACTCGCTCTCTGCCAATGATTTTTTTAATATCGAGGTTCG
GACCAGGACTGATGGAGCCAAGTATGCAGAACTCATAGTGGTCAGAGAGTTAGATCGGGAGCTGAAGTCA
AGCTACGAGCTTCAGCTCACTGCCTCAGACATGGGAGTACCTCAGAGGTCTGGCTCATCCATACTAAAAA
TAAGCATTTCAGACTCCAATGACAACAGCCCTGCTTTTGAGCAGCAATCTTATATAATACAACTCTTAGA
AAACTCCCCGGTTGGCACTTTGCTCTTAGATCTGAATGCCACGGATCCAGATGAGGGCGCTAATGGGAAA
ATTGTATATTCCTTCAGCAGTCATGTGTCTCCCAAAATTATGGAGACTTTTAAAATTGATTCTGAAAGAG
GACATTTGACTCTTTTCAAGCAAGTGGATTATGAAATCACCAAATCCTATGAGATTGATGTTCAGGCTCA
AGATTTGGGTCCAAATTCAATCCCAGCCCATTGCAAAATTATAATTAAGGTTGTGGATGTTAATGACAAT
AAACCTGAAATTAACATCAACCTCATGTCCCCTGGAAAAGAAGAAATATCTTATATTTTTGAAGGGGATC
CTATTGATACATTTGTTGCTTTGGTCAGAGTTCAGGACAAGGATTCTGGGCTGAATGGAGAAATAGTTTG
TAAGCTTCATGGACATGGTCACTTTAAACTTCAGAAGACATATGAAAACAATTATTTAATCTTAACTAAT
GCCACACTGGATAGAGAAAAGAGATCTGAGTATAGTTTGACTGTAATCGCTGAGGACAGGGGGACACCCA
GTCTCTCTACAGTGAAACATTTTACAGTTCAAATCAATGATATCAATGACAATCCACCCCACTTCCAGAG
AAGCCGATATGAATTTGTAATTTCAGAAAATAACTCACCAGGGGCATATATCACCACTGTTACAGCCACA
GATCCTGATCTTGGAGAAAATGGGCAAGTGACATACACCATCTTGGAGAGTTTTATTCTAGGAAGTTCCA
TAACTACATATGTAACCATTGACCCATCTAATGGAGCCATCTATGCCCTCAGAATCTTTGATCATGAAGA
AGTGAGTCAGATCACTTTTGTGGTAGAAGCAAGAGATGGAGGAAGCCCGAAGCAACTGGTAAGCAATACC
ACAGTTGTGCTCACCATCATTGACGAAAATGACAACGTTCCTGTGGTTATAGGGCCTGCATTGCGTAATA
ATACGGCAGAAATCACCATTCCCAAAGGGGCTGAAAGTGGCTTTCATGTCACAAGAATAAGGGCAATTGA
CAGAGACTCTGGTGTGAATGCTGAACTCAGCTGCGCCATAGTAGCAGGTAATGAGGAGAATATCTTCATA
ATTGATCCACGATCATGTGACATCCATACCAACGTTAGCATGGATTCTGTTCCCTACACAGAATGGGAGC
TGTCAGTTATCATTCAGGACAAAGGCAATCCTCAGCTACATACCAAAGTCCTTCTGAAGTGCATGATCTT
TGAATATGCAGAGTCGGTGACAAGTACAGCAATGACTTCAGTAAGCCAGGCATCCTTGGATGTCTCCATG
ATAATAATTATTTCCTTAGGAGCAATTTGTGCAGTGTTGCTGGTTATTATGGTGCTATTTGCAACTAGGT
GTAACCGCGAGAAGAAAGACACTAGATCCTATAACTGCAGGGTGGCCGAATCAACTTACCAGCACCACCC
AAAAAGGCCATCCCGGCAGATTCACAAAGGGGACATCACATTGGTGCCTACCATAAATGGCACTCTGCCC
ATCAGATCTCATCACAGATCGTCTCCATCTTCATCTCCTACCTTAGAAAGAGGGCAGATGGGCAGCCGGC
AGAGTCACAACAGTCACCAGTCACTCAACAGTTTGGTGACAATCTCATCAAACCACGTGCCAGAGAATTT
CTCATTAGAACTCACCCACGCCACTCCTGCTGTTGAGGTCTCTCAGCTTCTTTCAATGCTTCACCAGGGG
CAATATCAGCCAAGACCAAGTTTTCGAGGAAACAAATATTCCAGGAGCTACAGATATGCCCTTCAAGACA
TGGACAAATTTAGCTTGAAAGACAGTGGCCGTGGTGACAGTGAGGCAGGAGACAGTGATTATGATTTGGG
GCGAGATTCTCCAATAGATAGGCTGTTGGGTGAAGGATTCAGCGACCTGTTTCTCACAGATGGAAGAATT
CCAGCAGCTATGAGACTCTGCACGGAGGAGTGCAGGGTCCTGGGACACTCTGACCAGTGCTGGATGCCAC
CACTGCCCTCACCGTCTTCTGATTATAGGAGTAACATGTTCATTCCAGGGGAAGAATTCCCAACGCAACC
CCAGCAGCAGCATCCACATCAGAGTCTTGAGGATGACGCTCAGCCTGCAGATTCCGGTGAAAAGAAGAAG
AGTTTTTCCACCTTTGGAAAGGACTCCCCAAACGATGAGGACACTGGGGATACCAGCACATCATCTCTGC
TCTCGGAAATGAGCAGTGTGTTCCAGCGTCTCTTACCGCCTTCCCTGGACACCTATTCTGAATGCAGTGA
GGTGGATCGGTCCAACTCCCTGGAGCGCAGGAAGGGACCCTTGCCAGCCAAAACTGTGGGTTACCCACAG
GGGGTAGCGGCATGGGCAGCCAGTACGCATTTTCAAAATCCCACCACCAACTGTGGGCCGCCACTTGGAA
CTCACTCCAGTGTGCAGCCTTCTTCAAAATGGCTGCCAGCCATGGAGGAGATCCCTGAAAATTATGAGGA
AGATGATTTTGACAATGTGCTCAACCACCTCAATGATGGGAAACACGAACTCATGGATGCCAGTGAACTG
GTGGCAGAGATTAACAAACTGCTTCAAGATGTCCGCCAGAGCTAG

Translation (1134 aa):
MHQMNAKMHFRFVFALLIVSFNHDVLGKNLKYRIYEEQRVGSVIARLSEDVADVLLKLPNPSTVRFRAMQ
RGNSPLLVVNEDNGEISIGATIDREQLCQKNLNCSIEFDVITLPTEHLQLFHIEVEVLDINDNSPQFSRS
LIPIEISESAAVGTRIPLDSAFDPDVGENSLHTYSLSANDFFNIEVRTRTDGAKYAELIVVRELDRELKS
SYELQLTASDMGVPQRSGSSILKISISDSNDNSPAFEQQSYIIQLLENSPVGTLLLDLNATDPDEGANGK
IVYSFSSHVSPKIMETFKIDSERGHLTLFKQVDYEITKSYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDN
KPEININLMSPGKEEISYIFEGDPIDTFVALVRVQDKDSGLNGEIVCKLHGHGHFKLQKTYENNYLILTN
ATLDREKRSEYSLTVIAEDRGTPSLSTVKHFTVQINDINDNPPHFQRSRYEFVISENNSPGAYITTVTAT
DPDLGENGQVTYTILESFILGSSITTYVTIDPSNGAIYALRIFDHEEVSQITFVVEARDGGSPKQLVSNT
TVVLTIIDENDNVPVVIGPALRNNTAEITIPKGAESGFHVTRIRAIDRDSGVNAELSCAIVAGNEENIFI
IDPRSCDIHTNVSMDSVPYTEWELSVIIQDKGNPQLHTKVLLKCMIFEYAESVTSTAMTSVSQASLDVSM
IIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLP
IRSHHRSSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVEVSQLLSMLHQG
QYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFLTDGRI
PAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEFPTQPQQQHPHQSLEDDAQPADSGEKKK
SFSTFGKDSPNDEDTGDTSTSSLLSEMSSVFQRLLPPSLDTYSECSEVDRSNSLERRKGPLPAKTVGYPQ
GVAAWAASTHFQNPTTNCGPPLGTHSSVQPSSKWLPAMEEIPENYEEDDFDNVLNHLNDGKHELMDASEL
VAEINKLLQDVRQS


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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