NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1792.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1792.1 Public Homo sapiens 2 RMDN2 24 110 108 CCDS HistoryNCBI Gene:151393Re-query CCDS DB by CCDS ID:1792.1Re-query CCDS DB by GeneID:151393See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1792.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000234195.7 ENSP00000234195.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000234195.7Link to Ensembl Protein Viewer:ENSP00000234195.3Re-query CCDS DB by Nucleotide ID:ENST00000234195Re-query CCDS DB by Protein ID:ENSP00000234195
Original member Current member NCBI NM_144713.5 NP_653314.3 Accepted alive Link to Nucleotide Sequence:NM_144713.5Link to Protein Sequence:NP_653314.3Re-query CCDS DB by Nucleotide ID:NM_144713Re-query CCDS DB by Protein ID:NP_653314Link to BLAST:NP_653314.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653314.3 573 Q96LZ7-2 573 99.8255% 0 1

Chromosomal Locations for CCDS 1792.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 37950579 37950595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37951233 37952201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37974040 37974214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37975212 37975314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37981283 37981343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37989541 37989616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37991220 37991297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 37997416 37997514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38003991 38004044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38004136 38004216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 38066982 38066990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGGGAAAGTGCTTAAGCTGCTGCAAAGAGGACCAGAGCTTCCAACGATGTTCTCCAGAAGATCAAGTTA
GTACAGACGCCCAGCATCGTGGAGCCTCTTCTATTTCACAACCAAGTATATCTCTTGGTCATAAAACATC
TTATTCCCCTGTAACACATAAAGTCAATGCAGCCAAAGCAAGTAGAAGGTTATTATCTGTATCAAGTCCA
TCTTTCTCTGAAAGAAGATATTCTTTATTTGTTGGATTTCAAAAAAGAAATGCTTCCCCTTACTGGCAAC
AAAGTAGAGCTAACTTTGATTCTGAAGAAGACACAGGCTTCACTGATATAAAATCTTCCTCAGACCATTG
TGGTAGCTTTATTTCCCGCAGAAGACGTTTCTCATCCCGTAAACTAAGTATAGTTTCCTATTACAAGAGT
GCCATTTTTTTTGATCCTCAAGCAAGTGGCCAGAATGTGTTTAATCTAAATGAAATCGAAATCTTTTCTA
AAACTTCAAGTAATACTGATGCTAAAAAACATATAACCATCTCTGCTCCTGAATATAACACTAAAAATTT
TAAGAATTTTGAAACAAACACTACTTCTCCAGCCTTTGGGAACACTATTGATACAGCCTCCTATCAACAA
AGCACATCATCCTTCTTTTCTCTTGCAAGTGATATTTCCTCTCCCGATCAACAAAATGGAATTGCCAATG
ATATTCAACAAAGGGGCCAATTATGTAAAGATTTAAAAGATTTCCTTCATCCTCGTCCTGAAAGTTACAG
CACAGATCATTCTCCAATCATGATTCCACAGCATCCCTCTCAAAGTGGAACTTTCCCATTCCTCCATAAA
GCTGGATTTTCTTCATCTTATAAAAATTCTGGTTGCTTTATCCCACCTCAAAGCGAATTAACTTCAGGCC
TGTTTGAAGATGAAGACTTTGCTGTCTTGTTTCAAGATGAAGACAGATCTTCACCTATTGAAATTCCTAA
AATAAGGTATATTACAGCTAATACTGACACAGAAGAACAGAGTTTTCCAGTCCCTAAGGCATTTAACACA
CGTGTAGAGGAATTAAATTTAGATGTCCTTCTTCAGAAGGTAGATCATTTACGTATGAGTGAGTCTGGCA
AGTCGGAGAGTTTTGAACTACTTCGTGACCACAAAGAAAAGTTTAGAGATGAAATAGAGTTTATGTGGCG
ATTTGCTCGTGCTTATGGAGACATGTATGAACTATCTACAAACACACAAGAAAAGAAACATTATGCTAAT
ATTGGAAAAACTTTAAGTGAAAGAGCTATTAATAGAGCACCCATGAATGGACATTGTCATCTGTGGTATG
CAGTTTTGTGTGGCTATGTATCTGAGTTTGAGGGTTTACAAAACAAAATCAACTATGGGCACCTCTTCAA
GGAACATCTAGATATAGCAATCAAACTTTTACCAGAGGAACCCTTTCTATATTACCTCAAAGGGAGATAC
TGCTATACTGTCTCAAAACTGAGCTGGATTGAGAAAAAAATGGCTGCTACTCTGTTTGGAAAAATACCAT
CTTCAACTGTACAAGAAGCTTTACACAATTTCCTTAAGGCTGAAGAACTATGCCCTGGTTATTCTAATCC
CAATTACATGTACTTAGCAAAGTGTTATACTGATCTTGAGGAAAACCAGAATGCTTTGAAGTTCTGTAAT
TTGGCTTTATTGCTTCCTACTGTTACCAAAGAGGAGCTGTAG

Translation (573 aa):
MGKCLSCCKEDQSFQRCSPEDQVSTDAQHRGASSISQPSISLGHKTSYSPVTHKVNAAKASRRLLSVSSP
SFSERRYSLFVGFQKRNASPYWQQSRANFDSEEDTGFTDIKSSSDHCGSFISRRRRFSSRKLSIVSYYKS
AIFFDPQASGQNVFNLNEIEIFSKTSSNTDAKKHITISAPEYNTKNFKNFETNTTSPAFGNTIDTASYQQ
STSSFFSLASDISSPDQQNGIANDIQQRGQLCKDLKDFLHPRPESYSTDHSPIMIPQHPSQSGTFPFLHK
AGFSSSYKNSGCFIPPQSELTSGLFEDEDFAVLFQDEDRSSPIEIPKIRYITANTDTEEQSFPVPKAFNT
RVEELNLDVLLQKVDHLRMSESGKSESFELLRDHKEKFRDEIEFMWRFARAYGDMYELSTNTQEKKHYAN
IGKTLSERAINRAPMNGHCHLWYAVLCGYVSEFEGLQNKINYGHLFKEHLDIAIKLLPEEPFLYYLKGRY
CYTVSKLSWIEKKMAATLFGKIPSSTVQEALHNFLKAEELCPGYSNPNYMYLAKCYTDLEENQNALKFCN
LALLLPTVTKEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH