NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10161.1 Public Homo sapiens 15 CGNL1 24 110 108 CCDS HistoryNCBI Gene:84952Re-query CCDS DB by CCDS ID:10161.1Re-query CCDS DB by GeneID:84952See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281282.6 ENSP00000281282.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281282.6Link to Ensembl Protein Viewer:ENSP00000281282.5Re-query CCDS DB by Nucleotide ID:ENST00000281282Re-query CCDS DB by Protein ID:ENSP00000281282
Original member Current member NCBI NM_001252335.2 NP_001239264.1 Accepted alive Link to Nucleotide Sequence:NM_001252335.2Link to Protein Sequence:NP_001239264.1Re-query CCDS DB by Nucleotide ID:NM_001252335Re-query CCDS DB by Protein ID:NP_001239264Link to BLAST:NP_001239264.1
Original member Current member NCBI NM_032866.5 NP_116255.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032866.5Link to Protein Sequence:NP_116255.2Re-query CCDS DB by Nucleotide ID:NM_032866Re-query CCDS DB by Protein ID:NP_116255Link to BLAST:NP_116255.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239264.1 1302 Q0VF96-1 1302 100% 0 0
NP_116255.2 1302 Q0VF96-1 1302 100% 0 0

Chromosomal Locations for CCDS 10161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57438000 57439601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57440377 57440471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57442373 57442478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57451500 57451601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57452141 57452289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57453683 57453818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57461680 57461892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57516780 57516986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57518393 57518497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57523489 57523641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57524581 57524751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57528654 57528815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57531690 57531779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57543696 57543779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57544473 57544597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57545592 57545700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57546076 57546239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57547355 57547490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3909 nt):
ATGGAGCTGTATTTCGGTGAATATCAACATGTGCAGCAGGAATATGGGGTCCATCTGAGACTCGCAAGTG
AT
GATACCCAAAAATCAAGGAGTTCCCAGAACTCCAAGGCAGGCTCCTACGGTGTCAGTATTCGGGTCCA
G
GGAATTGATGGTCACCCCTATATTGTCCTGAATAACACAGAACGGTGCCTAGCAGGCACATCGTTTTCT
GAA
AATGGGCCACCCTTTCCACCTCCAGTGATAAATAACCTGCCTCTACATTCCAGCAATGGTTCTGTGC
CA
AAGGAGAACAGTGAAGAACTTCAGCTTCCAGAAAACCCATACGCCCAGCCTAGCCCAATAAGAAACCT
G
AAACAGCCCCTGCTCCATGAGGGCAAGAATGGAGTTCTAGATCGCAAAGACGGGTCTGTGAAGCCATCT
CAC
CTGCTGAACTTTCAGAGGCATCCAGAGCTTTTGCAACCCTATGACCCTGAAAAGAATGAGTTGAATT
TA
CAAAATCACCAGCCTTCTGAGAGTAATTGGCTAAAAACGTTGACAGAAGAAGGCATCAACAATAAGAA
G
CCTTGGACTTGCTTTCCCAAACCTAGCAATTCCCAGCCTACCAGTCCCTCCTTGGAAGACCCGGCCAAA
TCT
GGTGTGACAGCTATTCGTTTATGCAGCTCCGTGGTCATAGAGGACCCCAAAAAGCAGACCTCAGTGT
GT
GTAAACGTTCAGAGCTGCACCAAGGAGAGGGTGGGAGAGGAGGCCCTTTTCACTAGCGGGAGGCCCCT
G
ACTGCCCACAGCCCACATGCCCACCCTGAAACCAAGAAAACCAGGCCAGATGTTCTTCCCTTCCGGCGA
CAG
GATTCAGCGGGACCCGTCCTGGATGGAGCTCGGTCCCGGAGGTCCTCCTCGTCATCCACAACTCCCA
CG
TCAGCCAACTCTTTGTACAGGTTTTTACTGGATGATCAGGAATGTGCCATCCATGCCGACAACGTCAA
T
CGTCATGAAAACAGAAGGTATATTCCCTTCCTGCCAGGAACTGGACGGGATATTGATACAGGATCAATT
CCT
GGTGTGGATCAGTTAATTGAAAAATTTGATCAAAAACCTGGGCTTCAGAGAAGAGGAAGGTCTGGGA
AG
CGAAACAGAATTAATACAGATGACAGGAAAAGATCCAGAAGCGTGGATAGCGCCTTTCCTTTTGGCCT
C
CAAGGGAACTCGGAGTACCTGATTGAATTCAGTAGGAACTTGGGCAAGTCAAGCGAACACCTCCTCCGG
CCT
TCCCAGGTGTGCCCGCAGCGGCCACTGTCTCAGGAGCGCCGTGGGAAACAGAGCGTGGGCCGCACCT
TT
GCAAAGCTGCAGGGAGCAGCGCACGGGGCTTCATGTGCCCACTCCAGGCCTCCCCAGCCGAACATAGA
T
GGGAAAGTTCTGGAAACCGAAGGTAGTCAGGAAAGTACAGTGATCCGTGCGCCCTCCCTTGGTGCACAG
AGT
AAAAAGGAGGAGGAGGTGAAAACAGCCACCGCTACGCTGATGTTACAGAACCGGGCAACAGCAACTT
CG
CCTGATTCTGGTGCCAAGAAAATTTCCGTGAAGACATTTCCTTCGGCCTCAAATACTCAGGCCACACC
G
GATCTCTTAAAGGGCCAGCAAGAGCTCACTCAGCAAACCAATGAGGAGACAGCTAAGCAGATTCTCTAC
AAT
TACCTCAAAGAAGGAAGCACTGATAATGACGATGCTACTAAAAGGAAAGTCAACTTGGTCTTTGAGA
AA
ATCCAGACCTTAAAGTCTCGAGCAGCTGGGAGCGCCCAAGGAAATAACCAAGCTTGTAATTCCACATC
T
GAAGTCAAAGATCTATTGGAACAGAAAAGCAAGTTGACCATAGAAGTGGCTGAACTTCAGAGACAGCTT
CAA
CTGGAAGTCAAGAATCAACAGAACATTAAAGAAGAGAGAGAGAGGATGAGAGCAAACCTAGAAGAGC
TC
CGAAGCCAACACAACGAAAAGGTGGAGGAGAACTCCACATTGCAGCAACGACTGGAAGAAAGTGAAGG
G
GAGCTCCGGAAGAATCTGGAGGAGCTATTCCAGGTGAAGATGGAACGGGAGCAGCATCAGACTGAGATC
AGG
GATCTCCAGGACCAGCTCTCAGAAATGCACGATGAACTGGACAGTGCAAAGCGATCGGAGGACAGGG
AG
AAGGGAGCTCTGATTGAGGAGCTCTTACAGGCAAAACAGGATCTTCAAGATCTGCTGATTGCCAAAGA
G
GAGCAAGAAGACCTCTTGAGAAAGCGAGAGCGTGAACTCACCGCCCTGAAGGGAGCCCTGAAAGAAGAG
GTT
TCCAGCCATGATCAGGAGATGGACAAGCTGAAGGAGCAATATGATGCTGAGTTGCAGGCCCTGAGGG
AG
AGTGTGGAAGAAGCAACCAAGAATGTCGAGGTCTTGGCGAGCAGGAGCAACACTTCAGAGCAAGACCA
G
GCGGGGACTGAAATGCGCGTGAAGCTTCTGCAGGAGGAGAATGAGAAGCTGCAGGGAAGAAGCGAAGAG
CTG
GAGCGGAGAGTTGCTCAGCTTCAAAGGCAGATCGAGGACCTGAAAGGCGATGAAGCCAAGGCGAAGG
AA
ACGCTGAAGAAGTACGAGGGAGAAATACGACAGTTAGAGGAGGCCCTTGTGCACGCCAGAAAGGAAGA
A
AAAGAAGCTGTGTCAGCCAGAAGGGCCCTGGAGAATGAACTGGAGGCTGCTCAGGGAAATCTGAGTCAG
ACT
ACCCAGGAGCAGAAGCAGTTGTCTGAGAAGCTCAAAGAGGAGAGTGAGCAGAAGGAGCAGCTAAGAA
GG
TTGAAGAACGAGATGGAGAATGAGCGGTGGCACCTGGGCAAAACCATTGAGAAACTGCAGAAGGAGAT
G
GCAGACATTGTTGAGGCCTCCCGTACCTCAACCCTGGAGCTCCAGAACCAGCTGGATGAGTATAAGGAG
AAA
AACCGCAGGGAGCTCGCAGAAATGCAAAGACAGTTGAAGGAGAAAACGCTGGAGGCAGAAAAGTCCC
GA
CTGACAGCCATGAAAATGCAGGATGAGATGCGTCTGATGGAGGAAGAGTTACGGGACTACCAGAGAGC
T
CAGGATGAAGCACTCACAAAAAGGCAGCTTCTGGAGCAGACGCTGAAGGACCTGGAGTATGAGCTGGAA
GCC
AAGAGTCACCTCAAAGATGACCGCAGCAGGCTGGTCAAGCAGATGGAGGACAAGGTGTCTCAACTGG
AG
ATGGAACTGGAAGAAGAGAGAAACAACTCAGATTTGCTGTCTGAGAGGATCAGTAGGAGCAGGGAACA
G
ATGGAGCAGTTGAGGAATGAGCTACTTCAGGAGAGAGCTGCGAGACAAGACTTGGAGTGCGACAAGATT
TCC
CTGGAGAGGCAGAACAAGGACTTAAAGAGCCGGATTATCCACCTGGAAGGTTCCTACAGGTCCAGCA
AA
GAGGGGCTGGTTGTGCAGATGGAGGCCAGGATCGCGGAGCTGGAGGACCGCCTGGAGAGTGAGGAGAG
G
GATCGGGCCAATCTTCAGCTCAGCAACCGGCGGCTGGAGCGGAAAGTGAAGGAGCTGGTGATGCAGGTG
GAT
GATGAGCACCTGTCATTGACTGATCAGAAGGACCAGCTGAGCTTGCGTTTGAAAGCCATGAAGCGGC
AG
GTGGAGGAGGCTGAGGAGGAAATCGACAGACTGGAAAGTTCTAAAAAGAAGCTGCAGAGGGAGCTGGA
G
GAGCAGATGGACATGAATGAGCATCTGCAGGGGCAGCTCAACTCCATGAAGAAGGACTTAAGACTGAAG
AAG
CTGCCGAGTAAAGTGCTGGATGACATGGATGACGACGATGACCTCAGCACGGATGGGGGAAGCCTCT
AT
GAGGCGCCTGTGAGCTACACATTCTCCAAGGACAGCACCGTCGCCAGCCAGATCTGA


Translation (1302 aa):
MELYFGEYQHVQQEYGVHLRLASDDTQKSRSSQNSKAGSYGVSIRVQGIDGHPYIVLNNTERCLAGTSFS
E
NGPPFPPPVINNLPLHSSNGSVPKENSEELQLPENPYAQPSPIRNLKQPLLHEGKNGVLDRKDGSVKPS
H
LLNFQRHPELLQPYDPEKNELNLQNHQPSESNWLKTLTEEGINNKKPWTCFPKPSNSQPTSPSLEDPAK
S
GVTAIRLCSSVVIEDPKKQTSVCVNVQSCTKERVGEEALFTSGRPLTAHSPHAHPETKKTRPDVLPFRR
Q
DSAGPVLDGARSRRSSSSSTTPTSANSLYRFLLDDQECAIHADNVNRHENRRYIPFLPGTGRDIDTGSI
P
GVDQLIEKFDQKPGLQRRGRSGKRNRINTDDRKRSRSVDSAFPFGLQGNSEYLIEFSRNLGKSSEHLLR
P
SQVCPQRPLSQERRGKQSVGRTFAKLQGAAHGASCAHSRPPQPNIDGKVLETEGSQESTVIRAPSLGAQ
S
KKEEEVKTATATLMLQNRATATSPDSGAKKISVKTFPSASNTQ
ATPDLLKGQQELTQQTNEETAKQILY
N
YLKE
GSTDNDDATKRKVNLVFEKIQTLKSRAAGSAQGNNQACNSTSEVKDLLEQKSKLTIEVAELQRQL
Q
LEVK
NQQNIKEERERMRANLEELRSQHNEKVEENSTLQQRLEESEGELRKNLEELFQVKMEREQHQTEI
R
DLQDQLSEMHDELDSAKRSEDREKGALIE
ELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGALKEE
V
SSHDQEMDKLKEQYDAELQALRESVEEATK
NVEVLASRSNTSEQDQAGTEMRVKLLQEENEKLQGRSEE
L
ERRVAQLQRQIEDLKGDEAKAKETLKKYE
GEIRQLEEALVHARKEEKEAVSARRALENELEAAQGNLSQ
T
TQEQKQLSEKLKEESEQKEQLRRLKNEMENERWHLGKTIEKLQKE
MADIVEASRTSTLELQNQLDEYKE
K
NRRELAEMQRQLKEKTLEAEKSRLTAMKMQDE
MRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELE
A
KSHLKDDRSRLVKQME
DKVSQLEMELEEERNNSDLLSERISRSREQMEQLRNELLQERAARQDLECDKI
S
LERQ
NKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESEERDRANLQLSNRRLERKVKELVMQV
D
DEHLSLTDQKDQ
LSLRLKAMKRQVEEAEEEIDRLESSKKKLQRELEEQMDMNEHLQGQLNSMKKDLRLK
K
LPSKVLDDMDDDDDLSTDGGSLYEAPVSYTFSKDSTVASQI




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser