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Report for CCDS74530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74530.1 Public Homo sapiens 2 LRRTM4 24 110 108 CCDS HistoryNCBI Gene:80059Re-query CCDS DB by CCDS ID:74530.1Re-query CCDS DB by GeneID:80059See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409282.1 ENSP00000386286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409282.1Link to Ensembl Protein Viewer:ENSP00000386286.1Re-query CCDS DB by Nucleotide ID:ENST00000409282Re-query CCDS DB by Protein ID:ENSP00000386286
Original member Current member NCBI NM_001282928.3 NP_001269857.1 Accepted alive Link to Nucleotide Sequence:NM_001282928.3Link to Protein Sequence:NP_001269857.1Re-query CCDS DB by Nucleotide ID:NM_001282928Re-query CCDS DB by Protein ID:NP_001269857Link to BLAST:NP_001269857.1

Chromosomal Locations for CCDS 74530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 77518312 77519864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 77522109 77522115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGCCAGGTTTCCATTTAATTACGCAGCTGAAAGGCATGAGTGTGGTGCTGGTGCTACTTCCTACACTGC
TGCTTGTTATGCTCACGGGTGCTCAGAGAGCTTGCCCAAAGAACTGCAGATGTGATGGCAAAATTGTGTA
CTGTGAGTCTCATGCTTTCGCAGATATCCCTGAGAACATTTCTGGAGGGTCACAAGGCTTATCATTAAGG
TTCAACAGCATTCAGAAGCTCAAATCCAATCAGTTTGCCGGCCTTAACCAGCTTATATGGCTTTATCTTG
ACCATAATTACATTAGCTCAGTGGATGAAGATGCATTTCAAGGGATCCGTAGACTGAAAGAATTAATTCT
AAGCTCCAACAAAATTACTTATCTGCACAATAAAACATTTCACCCAGTTCCCAATCTCCGCAATCTGGAC
CTCTCCTACAATAAGCTTCAGACATTGCAATCTGAACAATTTAAAGGCCTTCGGAAACTCATCATTTTGC
ACTTGAGATCTAACTCACTAAAGACTGTGCCCATAAGAGTTTTTCAAGACTGTCGGAATCTTGATTTTTT
GGATTTGGGTTACAATCGTCTTCGAAGCTTGTCCCGAAATGCATTTGCTGGCCTCTTGAAGTTAAAGGAG
CTCCACCTGGAGCACAACCAGTTTTCCAAGATCAACTTTGCTCATTTTCCACGTCTCTTCAACCTCCGCT
CAATTTACTTACAATGGAACAGGATTCGCTCCATTAGCCAAGGTTTGACATGGACTTGGAGTTCCTTACA
CAACTTGGATTTATCAGGGAATGACATCCAAGGAATTGAGCCGGGCACATTTAAATGCCTCCCCAATTTA
CAAAAATTGAATTTGGATTCCAACAAGCTCACCAATATCTCACAGGAAACTGTCAATGCGTGGATATCAT
TAATATCCATCACATTGTCTGGAAATATGTGGGAATGCAGTCGGAGCATTTGTCCTTTATTTTATTGGCT
TAAGAATTTCAAAGGAAATAAGGAAAGCACCATGATATGTGCGGGACCTAAGCACATCCAGGGTGAAAAG
GTTAGTGATGCAGTGGAAACATATAATATCTGTTCTGAAGTCCAGGTGGTCAACACAGAAAGATCACACC
TGGTGCCCCAAACTCCCCAGAAACCTCTGATTATCCCTAGACCTACCATCTTCAAACCTGACGTCACCCA
ATCCACCTTTGAAACACCAAGCCCTTCCCCAGGGTTTCAGATTCCTGGCGCAGAGCAAGAGTATGAGCAT
GTTTCATTTCACAAAATTATTGCCGGGAGTGTGGCTCTCTTTCTCTCAGTGGCCATGATCCTCTTGGTGA
TCTATGTGTCTTGGAAACGCTACCCAGCCAGCATGAAACAACTCCAGCAACACTCTCTTATGAAGAGGCG
GCGGAAAAAGGCCAGAGAGTCTGAAAGACAAATGAATTCCCCTTTACAGGAGTATTATGTGGACTACAAG
CCTACAAACTCTGAGACCATGGATATATCGGTTAATGGATCTGGGCCCTGCACATATACCATCTCTGGCT
CCAGGGAATGTGAGGTATGA

Translation (519 aa):
MPGFHLITQLKGMSVVLVLLPTLLLVMLTGAQRACPKNCRCDGKIVYCESHAFADIPENISGGSQGLSLR
FNSIQKLKSNQFAGLNQLIWLYLDHNYISSVDEDAFQGIRRLKELILSSNKITYLHNKTFHPVPNLRNLD
LSYNKLQTLQSEQFKGLRKLIILHLRSNSLKTVPIRVFQDCRNLDFLDLGYNRLRSLSRNAFAGLLKLKE
LHLEHNQFSKINFAHFPRLFNLRSIYLQWNRIRSISQGLTWTWSSLHNLDLSGNDIQGIEPGTFKCLPNL
QKLNLDSNKLTNISQETVNAWISLISITLSGNMWECSRSICPLFYWLKNFKGNKESTMICAGPKHIQGEK
VSDAVETYNICSEVQVVNTERSHLVPQTPQKPLIIPRPTIFKPDVTQSTFETPSPSPGFQIPGAEQEYEH
VSFHKIIAGSVALFLSVAMILLVIYVSWKRYPASMKQLQQHSLMKRRRKKARESERQMNSPLQEYYVDYK
PTNSETMDISVNGSGPCTYTISGSRECEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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