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Report for CCDS4929.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4929.2 Public Homo sapiens 6 CRISP3 24 110 108 CCDS HistoryNCBI Gene:10321Re-query CCDS DB by CCDS ID:4929.2Re-query CCDS DB by GeneID:10321See the combined annotation on chromosome 6 in Sequence Viewer

Public Note for CCDS 4929.2
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript data. The updated start codon is found only in primates and it has a weak Kozak signal. It is possible that ribosomal leaky scanning may sometimes allow the better conserved downstream start codon to be used. There is no experimental evidence to indicate which start codon is preferentially used in vivo.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4929.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263045.9 ENSP00000263045.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263045.9Link to Ensembl Protein Viewer:ENSP00000263045.4Re-query CCDS DB by Nucleotide ID:ENST00000263045Re-query CCDS DB by Protein ID:ENSP00000263045
Original member Current member NCBI NM_006061.4 NP_006052.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006061.4Link to Protein Sequence:NP_006052.2Re-query CCDS DB by Nucleotide ID:NM_006061Re-query CCDS DB by Protein ID:NP_006052Link to BLAST:NP_006052.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006052.2 258 P54108-2 258 100% 0 0

Chromosomal Locations for CCDS 4929.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 49728730 49728857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49731163 49731251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49733195 49733292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49733703 49733848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49735504 49735591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49736391 49736507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49737325 49737398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 49744331 49744367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAAACAAATACTTCATCCTGCTCTGGAAACCACTGCAATGACATTATTCCCAGTGCTGTTGTTCCTGG
TTGCTGGGCTGCTTCCATCTTTTCCAGCAAATGAAGATAAGGATCCCGCTTTTACTGCTTTGTTAACCAC
CCAAACACAAGTGCAAAGGGAGATTGTGAATAAGCACAATGAACTGAGGAGAGCAGTATCTCCCCCTGCC
AGAAACATGCTGAAGATGGAATGGAACAAAGAGGCTGCAGCAAATGCCCAAAAGTGGGCAAACCAGTGCA
ATTACAGACACAGTAACCCAAAGGATCGAATGACAAGTCTAAAATGTGGTGAGAATCTCTACATGTCAAG
TGCCTCCAGCTCATGGTCACAAGCAATCCAAAGCTGGTTTGATGAGTACAATGATTTTGACTTTGGTGTA
GGGCCAAAGACTCCCAACGCAGTGGTTGGACATTATACACAGGTTGTTTGGTACTCTTCATACCTCGTTG
GATGTGGAAATGCCTACTGTCCCAATCAAAAAGTTCTAAAATACTACTATGTTTGCCAATATTGTCCTGC
TGGTAATTGGGCTAATAGACTATATGTCCCTTATGAACAAGGAGCACCTTGTGCCAGTTGCCCAGATAAC
TGTGACGATGGACTATGCACCAATGGTTGCAAGTACGAAGATCTCTATAGTAACTGTAAAAGTTTGAAGC
TCACATTAACCTGTAAACATCAGTTGGTCAGGGACAGTTGCAAGGCCTCCTGCAATTGTTCAAACAGCAT
TTATTAA

Translation (258 aa):
MKQILHPALETTAMTLFPVLLFLVAGLLPSFPANEDKDPAFTALLTTQTQVQREIVNKHNELRRAVSPPA
RNMLKMEWNKEAAANAQKWANQCNYRHSNPKDRMTSLKCGENLYMSSASSSWSQAIQSWFDEYNDFDFGV
GPKTPNAVVGHYTQVVWYSSYLVGCGNAYCPNQKVLKYYYVCQYCPAGNWANRLYVPYEQGAPCASCPDN
CDDGLCTNGCKYEDLYSNCKSLKLTLTCKHQLVRDSCKASCNCSNSIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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