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Report for CCDS43555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43555.1 Public Homo sapiens 7 SP8 24 110 108 CCDS HistoryNCBI Gene:221833Re-query CCDS DB by CCDS ID:43555.1Re-query CCDS DB by GeneID:221833See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418710.3 ENSP00000408792.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000418710.3Link to Ensembl Protein Viewer:ENSP00000408792.2Re-query CCDS DB by Nucleotide ID:ENST00000418710Re-query CCDS DB by Protein ID:ENSP00000408792
Original member Current member NCBI NM_182700.6 NP_874359.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182700.6Link to Protein Sequence:NP_874359.2Re-query CCDS DB by Nucleotide ID:NM_182700Re-query CCDS DB by Protein ID:NP_874359Link to BLAST:NP_874359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_874359.2 508 Q8IXZ3-4 508 100% 0 0

Chromosomal Locations for CCDS 43555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20784290 20785795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 20786778 20786798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGGCAACTTCACTTCTAGGGGAAGAACCGAGGTTGGGATCGACTCCTCTGGCCATGCTTGCCGCTACCT
GTAATAAGATAGGCAGCCCCAGCCCGTCTCCCTCCTCCCTCTCGGACAGCTCTTCTTCCTTCGGCAAAGG
CTTCCACCCCTGGAAACGCTCCTCGTCCTCTTCTTCCGCCAGCTGCAACGTAGTGGGTTCCAGTCTCTCA
AGCTTCGGCGTGTCCGGGGCCTCCAGGAACGGCGGCTCGTCCTCGGCGGCTGCGGCGGCCGCGGCAGCAG
CCGCGGCTGCCGCGGCCCTGGTGTCCGACTCGTTCAGCTGCGGCGGCTCGCCTGGCTCCAGCGCCTTCTC
CCTCACCTCCAGCAGCGCCGCAGCCGCCGCCGCCGCCGCCGCAGCCGCCGCCTCCAGCTCGCCCTTCGCC
AACGACTACTCTGTTTTCCAGGCCCCCGGAGTTTCCGGGGGCAGCGGCGGCGGCGGCGGGGGCGGCGGCG
GCGGCTCCTCCGCGCACTCGCAGGACGGCTCCCACCAGCCGGTGTTCATCTCCAAGGTGCACACCTCTGT
GGACGGGCTGCAGGGCATCTACCCGCGGGTGGGCATGGCGCACCCGTACGAGTCGTGGTTTAAGCCCTCG
CACCCGGGCCTGGGTGCTGCGGGCGAGGTGGGCTCGGCCGGCGCCTCCAGCTGGTGGGACGTGGGGGCCG
GCTGGATCGACGTGCAGAACCCGAACAGCGCGGCTGCGCTGCCCGGCTCGCTGCACCCTGCCGCCGGGGG
GCTCCAAACCTCGCTGCACTCGCCGCTCGGAGGCTACAACTCGGATTACTCGGGCCTGAGTCACTCGGCC
TTCAGCAGCGGCGCCTCCTCGCACCTGCTCAGCCCCGCCGGGCAGCACCTCATGGACGGCTTCAAGCCAG
TGCTACCCGGCTCCTACCCGGACTCGGCCCCGTCGCCGCTGGCCGGCGCGGGGGGCTCCATGTTGAGCGC
TGGGCCTTCGGCGCCGCTGGGGGGCTCCCCGCGCTCCTCAGCTCGCCGCTACTCCGGCCGCGCCACCTGC
GACTGCCCCAACTGCCAGGAGGCAGAGCGGCTGGGCCCTGCCGGGGCGAGCTTGCGGCGCAAGGGCCTGC
ACAGCTGCCACATCCCGGGCTGCGGCAAGGTGTACGGCAAGACTTCGCACCTCAAGGCGCACCTGCGCTG
GCACACGGGCGAGCGGCCCTTCGTGTGCAACTGGCTTTTCTGCGGCAAGCGCTTCACGCGCTCCGACGAG
CTGCAGCGGCACCTGCGGACCCACACCGGCGAGAAGCGCTTCGCCTGTCCAGTTTGCAACAAGCGCTTCA
TGCGCAGCGACCACCTCAGCAAGCACGTGAAGACGCACAGTGGCGGCGGCGGCGGCGGCGGCTCGGCGGG
CTCGGGCAGCGGCGGCAAGAAGGGCAGCGACACCGACAGCGAGCACAGCGCCGCGGGCAGCCCGCCCTGC
CACTCCCCAGAGCTGCTGCAGCCCCCCGAGCCCGGGCACCGCAACGGCCTAGAGTGA

Translation (508 aa):
MATSLLGEEPRLGSTPLAMLAATCNKIGSPSPSPSSLSDSSSSFGKGFHPWKRSSSSSSASCNVVGSSLS
SFGVSGASRNGGSSSAAAAAAAAAAAAAALVSDSFSCGGSPGSSAFSLTSSSAAAAAAAAAAAASSSPFA
NDYSVFQAPGVSGGSGGGGGGGGGGSSAHSQDGSHQPVFISKVHTSVDGLQGIYPRVGMAHPYESWFKPS
HPGLGAAGEVGSAGASSWWDVGAGWIDVQNPNSAAALPGSLHPAAGGLQTSLHSPLGGYNSDYSGLSHSA
FSSGASSHLLSPAGQHLMDGFKPVLPGSYPDSAPSPLAGAGGSMLSAGPSAPLGGSPRSSARRYSGRATC
DCPNCQEAERLGPAGASLRRKGLHSCHIPGCGKVYGKTSHLKAHLRWHTGERPFVCNWLFCGKRFTRSDE
LQRHLRTHTGEKRFACPVCNKRFMRSDHLSKHVKTHSGGGGGGGSAGSGSGGKKGSDTDSEHSAAGSPPC
HSPELLQPPEPGHRNGLE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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