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Report for CCDS45988.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45988.1 Public Homo sapiens 19 ZNF44 24 110 108 CCDS HistoryNCBI Gene:51710Re-query CCDS DB by CCDS ID:45988.1Re-query CCDS DB by GeneID:51710See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45988.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355684.6 ENSP00000347910.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355684.6Link to Ensembl Protein Viewer:ENSP00000347910.5Re-query CCDS DB by Nucleotide ID:ENST00000355684Re-query CCDS DB by Protein ID:ENSP00000347910
Original member Current member NCBI NM_016264.4 NP_057348.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016264.4Link to Protein Sequence:NP_057348.3Re-query CCDS DB by Nucleotide ID:NM_016264Re-query CCDS DB by Protein ID:NP_057348Link to BLAST:NP_057348.3

Chromosomal Locations for CCDS 45988.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12272407 12274063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12274973 12275033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12275956 12276082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12294692 12294694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGACTCAGTGGCCTTTGAGGATGTGGCTGTGAACTTCACCCATGAGGAGTGGGCTTTGCTGGGTCCAT
CACAGAAGAATCTCTACAGAGATGTGATGCGAGAAACCATTAGGAACCTGAACTGTATAGGAATGAAATG
GGAAAACCAGAACATTGATGATCAGCACCAAAATCTCAGGAGAAATCCAAGGTGTGATGTGGTAGAGAGA
TTTGGTAAAAGTAAAGATGGTAGTCAGTGTGGAGAAACCTTAAGCCAGATTCGAAATAGTATTGTAAACA
AGAACACTCCCGCCAGAGTAGATGCATGTGGAAGCAGTGTGAATGGAGAAGTCATAATGGGTCATTCATC
CCTGAATTGCTACATCAGAGTTGATACTGGACACAAACACCGGGAGTGTCATGAATATGCAGAGAAGTCA
TATACACATAAGCAGTGTGGGAAAGGCTTAAGTTATCGCCACTCCTTTCAAACATGTGAAAGGCCTCACA
CTGGAAAGAAACCCTATGATTGTAAGGAATGTGGAAAAACCTTCAGTTCTCCTGGAAACCTTCGAAGACA
TATGGTAGTAAAAGGTGGAGATGGACCTTATAAATGTGAATTGTGTGGGAAAGCCTTTTTTTGGCCCAGT
TTATTACGTATGCATGAAAGAACTCACACTGGAGAGAAACCATATGAATGTAAGCAGTGTTCTAAAGCCT
TCCCTGTTTACAGTTCCTATCTAAGACATGAAAAAATACACACTGGGGAGAAACCGTATGAATGTAAGCA
GTGTTCTAAAGCCTTCCCTGATTACAGTTCATATCTAAGACATGAAAGAACTCACACTGGAGAGAAACCC
TACAAATGTAAACAATGTGGGAAAGCCTTCAGTGTTTCCGGTTCCCTTCGAGTACATGAAAGAATTCACA
CTGGAGAGAAACCCTATACATGTAAACAGTGTGGGAAAGCGTTTTGTCATCTTGGAAGCTTTCAAAGACA
CATGATAATGCACAGTGGAGATGGACCTCATAAATGTAAGATATGTGGGAAAGGCTTTGATTTTCCTGGT
TCAGCACGAATTCATGAAGGAACTCACACTCTAGAGAAACCCTATGAATGTAAGCAATGTGGGAAATTGT
TATCTCATCGCTCAAGCTTTCGAAGACACATGATGGCACACACTGGAGATGGCCCTCATAAATGCACAGT
ATGTGGGAAAGCCTTTGATTCTCCTAGTGTATTTCAAAGACATGAAAGGACTCACACTGGAGAGAAACCC
TATGAATGCAAGCAATGTGGGAAAGCCTTCCGTACTTCCAGTTCCCTTCGAAAACATGAAACAACACACA
CTGGAGAGCAACCCTATAAATGTAAATGTGGAAAAGCTTTTAGTGATTTATTTTCCTTTCAAAGTCATGA
AACAACACACAGTGAAGAGGAGCCTTATGAATGTAAGGAGTGTGGGAAAGCATTTAGTTCTTTTAAATAC
TTTTGTCGCCATGAAAGGACTCACAGTGAAGAAAAATCTTATGAGTGTCAAATTTGTGGCAAAGCCTTCA
GTCGTTTCAGTTACTTAAAAACTCATGAAAGGACTCACACGGCAGAGAAGCCATATGAATGTAAGCAATG
CAGGAAAGCATTCTTTTGGCCCTCTTTCCTTCTAAGACATGAAAGGACTCACACTGGAGAAAGACCCTAT
GAATGTAAACACTGTGGTAAAGCCTTCAGTCGTTCCAGTTTCTGTCGAGAACATGAAAGAACTCACACTG
GAGAGAAGCCCTATGAATGTAAGGAATGTGGGAAAGCCTTCAGTTCTCTCAGTTCCTTTAATAGACATAA
AAGGACACACTGGAAGGATATTCTATAA

Translation (615 aa):
MDSVAFEDVAVNFTHEEWALLGPSQKNLYRDVMRETIRNLNCIGMKWENQNIDDQHQNLRRNPRCDVVER
FGKSKDGSQCGETLSQIRNSIVNKNTPARVDACGSSVNGEVIMGHSSLNCYIRVDTGHKHRECHEYAEKS
YTHKQCGKGLSYRHSFQTCERPHTGKKPYDCKECGKTFSSPGNLRRHMVVKGGDGPYKCELCGKAFFWPS
LLRMHERTHTGEKPYECKQCSKAFPVYSSYLRHEKIHTGEKPYECKQCSKAFPDYSSYLRHERTHTGEKP
YKCKQCGKAFSVSGSLRVHERIHTGEKPYTCKQCGKAFCHLGSFQRHMIMHSGDGPHKCKICGKGFDFPG
SARIHEGTHTLEKPYECKQCGKLLSHRSSFRRHMMAHTGDGPHKCTVCGKAFDSPSVFQRHERTHTGEKP
YECKQCGKAFRTSSSLRKHETTHTGEQPYKCKCGKAFSDLFSFQSHETTHSEEEPYECKECGKAFSSFKY
FCRHERTHSEEKSYECQICGKAFSRFSYLKTHERTHTAEKPYECKQCRKAFFWPSFLLRHERTHTGERPY
ECKHCGKAFSRSSFCREHERTHTGEKPYECKECGKAFSSLSSFNRHKRTHWKDIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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