NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6958.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6958.1 Public Homo sapiens 9 GTF3C5 24 110 108 CCDS HistoryNCBI Gene:9328Re-query CCDS DB by CCDS ID:6958.1Re-query CCDS DB by GeneID:9328See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6958.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372097.10 ENSP00000361169.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372097.10Link to Ensembl Protein Viewer:ENSP00000361169.5Re-query CCDS DB by Nucleotide ID:ENST00000372097Re-query CCDS DB by Protein ID:ENSP00000361169
Original member Current member NCBI NM_012087.4 NP_036219.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012087.4Link to Protein Sequence:NP_036219.2Re-query CCDS DB by Nucleotide ID:NM_012087Re-query CCDS DB by Protein ID:NP_036219Link to BLAST:NP_036219.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036219.2 519 Q9Y5Q8-1 519 100% 0 0

Chromosomal Locations for CCDS 6958.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133031012 133031164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133042087 133042306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133043728 133043926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133050783 133050978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133052060 133052164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133053828 133053942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133054408 133054488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133054712 133054809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133056012 133056094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133056766 133056908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133057814 133057980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCGGCGGAGGCGGCCGATTTGGGGCTGGGGGCCGCCGTCCCCGTGGAGCTGAGGCGGGAGCGACGCA
TGGTGTGCGTGGAGTACCCGGGAGTGGTGCGTGATGTGGCTAAGATGCTGCCGACTCTGGGCGGCGAGGA
AGGCGTCTCCCGGATCTACGCAGACCCCACCAAGAGGCTGGAGCTGTACTTCCGGCCCAAGGACCCATAC
TGCCACCCAGTGTGCGCCAACCGCTTCAGTACCAGCAGCCTGCTGCTCCGCATCAGGAAGAGAACGAGGC
GGCAGAAAGGGGTGCTGGGCACTGAGGCCCACTCCGAGGTCACATTTGACATGGAGATCCTTGGCATCAT
CTCCACCATTTACAAATTTCAGGGGATGTCTGACTTCCAGTACTTGGCTGTGCATACGGAAGCAGGCGGC
AAGCATACGTCAATGTATGACAAGGTGCTCATGCTCCGGCCCGAGAAGGAGGCCTTTTTCCACCAGGAGC
TGCCGCTCTACATCCCCCCACCCATCTTCTCCCGGCTGGACGCCCCGGTGGACTACTTCTACCGACCAGA
GACCCAGCACCGGGAAGGCTACAACAATCCCCCCATCTCAGGTGAGAATCTGATTGGCCTGAGCAGAGCC
CGGCGCCCCCACAATGCCATCTTTGTCAACTTTGAGGATGAGGAGGTGCCCAAGCAGCCACTGGAGGCTG
CAGCCCAGACGTGGAGGAGAGTCTGCACTAACCCCGTGGACCGGAAGGTGGAGGAGGAGCTGAGGAAGCT
GTTTGACATCCGTCCCATCTGGTCCCGAAATGCTGTCAAGGCCAACATCAGCGTCCACCCAGACAAGCTC
AAGGTCTTGCTTCCCTTCATAGCCTATTACATGATAACAGGCCCCTGGCGCAGCCTATGGATTCGATTTG
GGTATGACCCCCGAAAAAACCCAGATGCCAAGATTTATCAAGTCCTCGATTTCCGAATCCGTTGTGGAAT
GAAACACGGTTACGCCCCCAGTGACTTGCCGGTCAAAGCAAAGCGCAGCACCTACAACTACAGCCTCCCC
ATCACCGTCAAGAAGACATCCAGCCAGCTTGTCACCATGCATGACCTGAAGCAGGGCCTGGGCCCGTCGG
GGACGAGTGGTGCTCGGAAACCAGCTTCCAGCAAGTACAAGCTCAAGGACTCTGTCTACATCTTCCGGGA
AGGGGCCTTGCCACCCTATCGGCAGATGTTCTACCAGTTATGCGACTTGAATGTGGAAGAGTTGCAGAAG
ATCATTCACCGCAATGACGGGGCAGAGAATTCCTGCACAGAACGGGATGGGTGGTGCCTCCCCAAGACCA
GCGACGAGCTCAGGGACACCATGTCCCTCATGATCCGGCAGACCATCCGCTCCAAGAGGCCTGCTCTCTT
TTCCAGCTCAGCCAAGGCTGATGGCGGAAAAGAGCAGCTGACGTACGAGTCTGGGGAAGACGAGGAGGAT
GAGGAGGAGGAGGAAGAGGAGGAGGAGGACTTCAAGCCATCCGACGGCAGTGAAAACGAAATGGAGACAG
AGATTCTGGACTACGTGTGA

Translation (519 aa):
MAAEAADLGLGAAVPVELRRERRMVCVEYPGVVRDVAKMLPTLGGEEGVSRIYADPTKRLELYFRPKDPY
CHPVCANRFSTSSLLLRIRKRTRRQKGVLGTEAHSEVTFDMEILGIISTIYKFQGMSDFQYLAVHTEAGG
KHTSMYDKVLMLRPEKEAFFHQELPLYIPPPIFSRLDAPVDYFYRPETQHREGYNNPPISGENLIGLSRA
RRPHNAIFVNFEDEEVPKQPLEAAAQTWRRVCTNPVDRKVEEELRKLFDIRPIWSRNAVKANISVHPDKL
KVLLPFIAYYMITGPWRSLWIRFGYDPRKNPDAKIYQVLDFRIRCGMKHGYAPSDLPVKAKRSTYNYSLP
ITVKKTSSQLVTMHDLKQGLGPSGTSGARKPASSKYKLKDSVYIFREGALPPYRQMFYQLCDLNVEELQK
IIHRNDGAENSCTERDGWCLPKTSDELRDTMSLMIRQTIRSKRPALFSSSAKADGGKEQLTYESGEDEED
EEEEEEEEEDFKPSDGSENEMETEILDYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH