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Report for CCDS83259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83259.1 Public Homo sapiens 8 SFTPC 24 110 108 CCDS HistoryNCBI Gene:6440Re-query CCDS DB by CCDS ID:83259.1Re-query CCDS DB by GeneID:6440See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 83259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524255.5 ENSP00000429552.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524255.5Link to Ensembl Protein Viewer:ENSP00000429552.1Re-query CCDS DB by Nucleotide ID:ENST00000524255Re-query CCDS DB by Protein ID:ENSP00000429552
Original member Current member NCBI NM_001317779.2 NP_001304708.1 Accepted alive Link to Nucleotide Sequence:NM_001317779.2Link to Protein Sequence:NP_001304708.1Re-query CCDS DB by Nucleotide ID:NM_001317779Re-query CCDS DB by Protein ID:NP_001304708Link to BLAST:NP_001304708.1
Original member Current member NCBI NM_001385660.1 NP_001372589.1 Accepted alive Link to Nucleotide Sequence:NM_001385660.1Link to Protein Sequence:NP_001372589.1Re-query CCDS DB by Nucleotide ID:NM_001385660Re-query CCDS DB by Protein ID:NP_001372589Link to BLAST:NP_001372589.1

Chromosomal Locations for CCDS 83259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 22161829 22161870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163080 22163202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163436 22163546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 22163883 22164041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (435 nt):
ATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCGCCGGTTCTGGAGATGAGCATTGGGGCGCCGG
AAGCCCAGCAACGCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGG
CCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCACCTGCTGCTACATC
ATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAACTTCCAGATGG
AATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGG
CTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTGGCGAGGTGCCG
CTCTACTACATCTAG

Translation (144 aa):
MDVGSKEVLMESPPVLEMSIGAPEAQQRLALSEHLVTTATFSIGSTGLVVYDYQQLLIAYKPAPGTCCYI
MKIAPESIPSLEALTRKVHNFQMECSLQAKPAVPTSKLGQAEGRDAGSAPSGGDPAFLGMAVSTLCGEVP
LYYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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