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Report for CCDS10497.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10497.1 Public Homo sapiens 16 ZNF200 24 110 108 CCDS HistoryNCBI Gene:7752Re-query CCDS DB by CCDS ID:10497.1Re-query CCDS DB by GeneID:7752See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10497.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431561.7 ENSP00000395723.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431561.7Link to Ensembl Protein Viewer:ENSP00000395723.3Re-query CCDS DB by Nucleotide ID:ENST00000431561Re-query CCDS DB by Protein ID:ENSP00000395723
Original member Current member EBI ENST00000414144.7 ENSP00000405786.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000414144.7Link to Ensembl Protein Viewer:ENSP00000405786.2Re-query CCDS DB by Nucleotide ID:ENST00000414144Re-query CCDS DB by Protein ID:ENSP00000405786
Original member Current member NCBI NM_003454.4 NP_003445.2 Accepted alive Link to Nucleotide Sequence:NM_003454.4Link to Protein Sequence:NP_003445.2Re-query CCDS DB by Nucleotide ID:NM_003454Re-query CCDS DB by Protein ID:NP_003445Link to BLAST:NP_003445.2
Original member Current member NCBI NM_198088.3 NP_932354.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198088.3Link to Protein Sequence:NP_932354.1Re-query CCDS DB by Nucleotide ID:NM_198088Re-query CCDS DB by Protein ID:NP_932354Link to BLAST:NP_932354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003445.2 395 P98182-1 395 100% 0 0
NP_932354.1 395 P98182-1 395 100% 0 0

Chromosomal Locations for CCDS 10497.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3223892 3224613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3232421 3232547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3232833 3232921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3233506 3233755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGATGGCTGCAAAAGTGGTTCCTATGCCCCCAAAGCCAAAGCAGTCCTTTATACTGAGAGTTCCGCCAG
ACTCCAAGCTGGGCCAAGACCTACTTCGAGATGCCACTAACGGGCCCAAGACCATCCACCAGCTAGTGCT
GGAGCACTTCCTCACCTTCTTGCCCAAGCCAAGCCTGGTCCAGCCCAGTCAGAAAGTCAAGGAGACCTTG
GTTATTATGAAAGATGTGAGCTCAAGCCTTCAGAACAGAGTGCATCCTCGTCCCTTGGTGAAGCTTCTGC
CCAAAGGAGTCCAAAAGGAACAAGAGACAGTGTCTCTGTATTTGAAAGCTAACCCTGAGGAGCTGGTGGT
CTTTGAGGATTTGAATGTATTTCACTGCCAGGAAGAATGTGTGAGCTTGGATCCTACTCAACAACTCACG
TCAGAGAAGGAAGATGACAGCAGTGTCGGGGAAATGATGTTACTGGCAGTCAATGGCAGTAATCCTGAAG
GTGAAGATCCTGAGAGGGAACCTGTAGAAAATGAAGATTATAGAGAAAAGTCTTCAGATGATGATGAAAT
GGATTCTTCCTTGGTCTCTCAGCAGCCTCCCGATAACCAGGAAAAGGAACGACTAAATACATCCATTCCA
CAAAAAAGGAAAATGAGAAATCTGTTAGTTACCATTGAGAATGATACTCCTCTAGAGGAACTCTCAAAAT
ATGTAGACATCAGTATTATTGCCCTTACTCGAAATCGGAGGACAAGGAGATGGTACACTTGTCCACTGTG
TGGGAAACAGTTTAATGAAAGTTCTTACCTCATTTCCCACCAGAGGACCCACACTGGAGAAAAACCCTAT
GACTGTAATCACTGTGGGAAAAGCTTCAATCATAAAACAAACCTCAATAAACATGAGCGAATTCATACAG
GAGAGAAACCTTATTCCTGTTCTCAGTGTGGAAAAAACTTCCGTCAGAATTCTCATCGGAGTCGTCATGA
AGGAATCCATATAAGGGAGAAGATATTTAAGTGTCCAGAATGTGGGAAAACCTTCCCAAAGAATGAGGAG
TTTGTGCTTCATCTGCAGAGTCATGAGGCTGAGAGACCATATGGTTGCAAAAAATGTGGGAGAAGATTTG
GTCGGCTGTCAAACTGTACCCGGCATGAGAAAACCCACTCAGCCTGTAAGACCCGAAAGCAGAAGTAA

Translation (395 aa):
MMAAKVVPMPPKPKQSFILRVPPDSKLGQDLLRDATNGPKTIHQLVLEHFLTFLPKPSLVQPSQKVKETL
VIMKDVSSSLQNRVHPRPLVKLLPKGVQKEQETVSLYLKANPEELVVFEDLNVFHCQEECVSLDPTQQLT
SEKEDDSSVGEMMLLAVNGSNPEGEDPEREPVENEDYREKSSDDDEMDSSLVSQQPPDNQEKERLNTSIP
QKRKMRNLLVTIENDTPLEELSKYVDISIIALTRNRRTRRWYTCPLCGKQFNESSYLISHQRTHTGEKPY
DCNHCGKSFNHKTNLNKHERIHTGEKPYSCSQCGKNFRQNSHRSRHEGIHIREKIFKCPECGKTFPKNEE
FVLHLQSHEAERPYGCKKCGRRFGRLSNCTRHEKTHSACKTRKQK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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