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Report for CCDS45555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45555.1 Public Homo sapiens 16 DEF8 24 110 108 CCDS HistoryNCBI Gene:54849Re-query CCDS DB by CCDS ID:45555.1Re-query CCDS DB by GeneID:54849See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45555.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418391.6 ENSP00000412784.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418391.6Link to Ensembl Protein Viewer:ENSP00000412784.2Re-query CCDS DB by Nucleotide ID:ENST00000418391Re-query CCDS DB by Protein ID:ENSP00000412784
Original member Current member EBI ENST00000610455.4 ENSP00000480073.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610455.4Link to Ensembl Protein Viewer:ENSP00000480073.1Re-query CCDS DB by Nucleotide ID:ENST00000610455Re-query CCDS DB by Protein ID:ENSP00000480073
Original member Current member NCBI NM_001242821.2 NP_001229750.1 Accepted alive Link to Nucleotide Sequence:NM_001242821.2Link to Protein Sequence:NP_001229750.1Re-query CCDS DB by Nucleotide ID:NM_001242821Re-query CCDS DB by Protein ID:NP_001229750Link to BLAST:NP_001229750.1
Original member Current member NCBI NM_001242822.2 NP_001229751.1 Accepted alive Link to Nucleotide Sequence:NM_001242822.2Link to Protein Sequence:NP_001229751.1Re-query CCDS DB by Nucleotide ID:NM_001242822Re-query CCDS DB by Protein ID:NP_001229751Link to BLAST:NP_001229751.1
Original member Current member NCBI NM_017702.4 NP_060172.1 Accepted alive Link to Nucleotide Sequence:NM_017702.4Link to Protein Sequence:NP_060172.1Re-query CCDS DB by Nucleotide ID:NM_017702Re-query CCDS DB by Protein ID:NP_060172Link to BLAST:NP_060172.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001229750.1 197 Q6ZN54-2 197 100% 0 0
NP_001229751.1 197 Q6ZN54-2 197 100% 0 0
NP_060172.1 197 Q6ZN54-2 197 100% 0 0

Chromosomal Locations for CCDS 45555.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 89954253 89954376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89955169 89955266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89957511 89957660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 89959014 89959235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGAATATGATGAGAAGCTGGCCCGTTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGTCTGGGC
CGAGACAGCATGAGCAGGGCCCTGGGGAGGAGGTCCCGGACGTCACTCCTGAAGAGGCCCTGCCTGAGCT
GCCCCCTGGGGAGCCGGAATTCCGCTGCCCTGAACGCGTGATGGATCTCGGCCTGTCTGAGGACCACTTC
TCCCGCCCTGTGGGTCTGTTCCTGGCCTCTGACGTCCAGCAGCTGCGGCAGGCGATCGAGGAGTGCAAGC
AGGTGATTCTGGAGCTGCCCGAGCAGTCGGAGAAGCAGAAGGATGCCGTGGTGCGACTCATCCACCTCCG
GCTGAAGCTCCAGGAGCTGAAGGACCCCAATGAGGATGAGCCAAACATCCGAGTGCTCCTTGAGCACCGC
TTTTACAAGGAGAAGAGCAAGAGCGTCAAGCAGACCTGTGACAAGTGTAACACCATCATCTGGGGGCTCA
TTCAGACCTGGTACACCTGCACAGGTGGGCCGAGACCCAGACGAGGAGTGAGGAATGAGAGAGACCAAAG
TTCCTGCCTCCGCTGGGCTCACATTCAGATGTGA

Translation (197 aa):
MEYDEKLARFRQAHLNPFNKQSGPRQHEQGPGEEVPDVTPEEALPELPPGEPEFRCPERVMDLGLSEDHF
SRPVGLFLASDVQQLRQAIEECKQVILELPEQSEKQKDAVVRLIHLRLKLQELKDPNEDEPNIRVLLEHR
FYKEKSKSVKQTCDKCNTIIWGLIQTWYTCTGGPRPRRGVRNERDQSSCLRWAHIQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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