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Report for CCDS12443.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12443.1 Public Homo sapiens 19 FXYD3 24 110 108 CCDS HistoryNCBI Gene:5349Re-query CCDS DB by CCDS ID:12443.1Re-query CCDS DB by GeneID:5349See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12443.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346446.9 ENSP00000328259.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346446.9Link to Ensembl Protein Viewer:ENSP00000328259.5Re-query CCDS DB by Nucleotide ID:ENST00000346446Re-query CCDS DB by Protein ID:ENSP00000328259
Original member Current member EBI ENST00000344013.10 ENSP00000339499.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344013.10Link to Ensembl Protein Viewer:ENSP00000339499.7Re-query CCDS DB by Nucleotide ID:ENST00000344013Re-query CCDS DB by Protein ID:ENSP00000339499
Original member Current member EBI ENST00000435734.6 ENSP00000389770.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435734.6Link to Ensembl Protein Viewer:ENSP00000389770.2Re-query CCDS DB by Nucleotide ID:ENST00000435734Re-query CCDS DB by Protein ID:ENSP00000389770
Original member Current member EBI ENST00000648240.1 ENSP00000497169.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648240.1Link to Ensembl Protein Viewer:ENSP00000497169.1Re-query CCDS DB by Nucleotide ID:ENST00000648240Re-query CCDS DB by Protein ID:ENSP00000497169
Original member Current member NCBI NM_001136012.2 NP_001129484.1 Accepted alive Link to Nucleotide Sequence:NM_001136012.2Link to Protein Sequence:NP_001129484.1Re-query CCDS DB by Nucleotide ID:NM_001136012Re-query CCDS DB by Protein ID:NP_001129484Link to BLAST:NP_001129484.1
Original member Current member NCBI NM_021910.3 NP_068710.1 Accepted alive Link to Nucleotide Sequence:NM_021910.3Link to Protein Sequence:NP_068710.1Re-query CCDS DB by Nucleotide ID:NM_021910Re-query CCDS DB by Protein ID:NP_068710Link to BLAST:NP_068710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129484.1 113 Q14802-2 113 100% 0 0
NP_068710.1 113 Q14802-2 113 100% 0 0

Chromosomal Locations for CCDS 12443.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35119377 35119416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35121078 35121110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35121222 35121245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35122765 35122954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35123271 35123308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35123441 35123457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (342 nt):
ATGCAGAAGGTGACCCTGGGCCTGCTTGTGTTCCTGGCAGGCTTTCCTGTCCTGGACGCCAATGACCTAG
AAGATAAAAACAGTCCTTTCTACTATGACTGGCACAGCCTCCAGGTTGGCGGGCTCATCTGCGCTGGGGT
TCTGTGCGCCATGGGCATCATCATCGTCATGAGTGAGTGGAGGAGCTCGGGGGAGCAGGCGGGCCGGGGC
TGGGGCTCCCCTCCCCTGACCACTCAGCTCTCCCCAACAGGTGCAAAATGCAAATGCAAGTTTGGCCAGA
AGTCCGGTCACCATCCAGGGGAGACTCCACCTCTCATCACCCCAGGCTCAGCCCAAAGCTGA

Translation (113 aa):
MQKVTLGLLVFLAGFPVLDANDLEDKNSPFYYDWHSLQVGGLICAGVLCAMGIIIVMSEWRSSGEQAGRG
WGSPPLTTQLSPTGAKCKCKFGQKSGHHPGETPPLITPGSAQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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