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Report for CCDS11353.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11353.2 Public Homo sapiens 17 ZPBP2 24 110 108 CCDS HistoryNCBI Gene:124626Re-query CCDS DB by CCDS ID:11353.2Re-query CCDS DB by GeneID:124626See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11353.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377940.3 ENSP00000367174.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000377940.3Link to Ensembl Protein Viewer:ENSP00000367174.3Re-query CCDS DB by Nucleotide ID:ENST00000377940Re-query CCDS DB by Protein ID:ENSP00000367174
Original member Current member NCBI NM_198844.3 NP_942141.2 Accepted alive Link to Nucleotide Sequence:NM_198844.3Link to Protein Sequence:NP_942141.2Re-query CCDS DB by Nucleotide ID:NM_198844Re-query CCDS DB by Protein ID:NP_942141Link to BLAST:NP_942141.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_942141.2 316 Q6X784-2 316 100% 0 0

Chromosomal Locations for CCDS 11353.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 39868355 39868406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39870694 39870819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39871464 39871625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39872270 39872488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39873044 39873126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39875254 39875434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 39876682 39876809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGATGCGAACGTGCGTCCTACTCTCCGCGGTGCTCTGGTGCCTCACAGGAGACAAAATATATGTAGAGT
TACATCAAAATAGTCCAGTCCTTATCTGTATGGATTTTAAGCTTTCTAAAAAAGAAATAGTGGACCCCAC
CTACTTATGGATTGGGCCTAATGAAAAGACGTTAACAGGAAATAATAGAATAAATATAACTGAAACTGGA
CAGCTGATGGTGAAAGATTTTTTGGAGCCTTTGTCTGGACTTTACACATGTACTCTTTCTTATAAGACTG
TTAAAGCAGAAACTCAAGAAGAAAAAACAGTCAAAAAGAGATATGACTTTATGGTCTTTGCCTATCGGGA
ACCTGATTATTCATATCAGATGGCTGTACGTTTTACCACAAGGTCTTGTATAGGGAGATACAATGATGTA
TTCTTTAGAGTGCTGAAGAAAATCTTGGATAGTCTAATTTCTGATTTGTCATGCCATGTCATAGAGCCAT
CATATAAATGCCATTCTGTTGAAATTCCAGAACATGGCCTCATACATGAGCTATTTATAGCATTTCAAGT
TAATCCTTTTGCGCCGGGGTGGAAAGGTGCTTGCAATGGATCTGTTGACTGTGAAGATACCACTAATCAT
AATATCCTCCAGGCAAGAGATCGAATAGAAGACTTTTTTCGGAGCCAAGCATATATTTTCTACCATAACT
TTAATAAAACTCTACCAGCAATGCATTTTGTGGACCACAGTTTGCAAGTAGTACGTCTGGATAGCTGTCG
ACCAGGCTTTGGAAAAAATGAACGTCTACACAGTAATTGCGCTAGCTGTTGTGTGGTTTGTAGTCCTGCG
ACTTTTAGTCCTGATGTTAATGTAACTTGTCAGACCTGCGTTTCCGTCCTTACCTATGGAGCTAAATCTT
GCCCACAAACTTCAAACAAAAATCAGCAATATGAAGATTAG

Translation (316 aa):
MMRTCVLLSAVLWCLTGDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRINITETG
QLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDV
FFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNH
NILQARDRIEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPA
TFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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