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Report for CCDS4349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4349.1 Public Homo sapiens 5 FABP6 24 110 108 CCDS HistoryNCBI Gene:2172Re-query CCDS DB by CCDS ID:4349.1Re-query CCDS DB by GeneID:2172See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4349.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000402432.4 ENSP00000385433.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000402432.4Link to Ensembl Protein Viewer:ENSP00000385433.4Re-query CCDS DB by Nucleotide ID:ENST00000402432Re-query CCDS DB by Protein ID:ENSP00000385433
Original member Current member NCBI NM_001445.3 NP_001436.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001445.3Link to Protein Sequence:NP_001436.1Re-query CCDS DB by Nucleotide ID:NM_001445Re-query CCDS DB by Protein ID:NP_001436Link to BLAST:NP_001436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001436.1 128 P51161-1 128 100% 0 0

Chromosomal Locations for CCDS 4349.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160229558 160229624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160232098 160232273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160234820 160234909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160238606 160238659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (387 nt):
ATGGCTTTCACCGGCAAGTTCGAGATGGAGAGTGAGAAGAATTATGATGAGTTCATGAAGCTCCTTGGGA
TCTCCAGCGATGTAATCGAAAAGGCCCGCAACTTCAAGATCGTCACGGAGGTGCAGCAGGATGGGCAGGA
CTTCACTTGGTCCCAGCACTACTCCGGGGGCCACACCATGACCAACAAGTTCACTGTTGGCAAGGAAAGC
AACATACAGACAATGGGGGGCAAGACGTTCAAGGCCACTGTGCAGATGGAGGGCGGGAAGCTGGTGGTGA
ATTTCCCCAACTATCACCAGACCTCAGAGATCGTGGGTGACAAGCTGGTGGAGGTCTCCACCATCGGAGG
CGTGACCTATGAGCGCGTGAGCAAGAGACTGGCCTAA

Translation (128 aa):
MAFTGKFEMESEKNYDEFMKLLGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKES
NIQTMGGKTFKATVQMEGGKLVVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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