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Report for CCDS52500.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52500.1 Public Mus musculus 8 Gm15056 23 108 98 CCDS HistoryNCBI Gene:100504014Re-query CCDS DB by CCDS ID:52500.1Re-query CCDS DB by GeneID:100504014See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52500.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000167686.2 ENSMUSP00000131853.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167686.2Link to Ensembl Protein Viewer:ENSMUSP00000131853.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000167686Re-query CCDS DB by Protein ID:ENSMUSP00000131853
Original member Current member NCBI NM_001177471.2 NP_001170942.1 Accepted alive Link to Nucleotide Sequence:NM_001177471.2Link to Protein Sequence:NP_001170942.1Re-query CCDS DB by Nucleotide ID:NM_001177471Re-query CCDS DB by Protein ID:NP_001170942Link to BLAST:NP_001170942.1

Chromosomal Locations for CCDS 52500.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 20900653 20900774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20900871 20900957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 20901916 20901973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (267 nt):
ATGAAATTACTTTACCTTCTCATCCCTGTTATCCTCTTGATTTCTCAAGCCATGGCAGCTCCTGAAGGCT
GTAAACAGGAAAGACAGAATGAGTGGAAAGATTTGGCACAGAAGAAAGGCACCTTCATCAATGCCTTCAT
CAACAATTATGAGCACCATTACTGTGACTCTCCTACCACTGTGTGCCTGAGGAGGAAAACAAAGTGTATT
CGCATGCCAGGGTTTTGCCCTGGCAGGAGCTTCTGCTGTATGAGAACCATGACCTGA

Translation (88 aa):
MKLLYLLIPVILLISQAMAAPEGCKQERQNEWKDLAQKKGTFINAFINNYEHHYCDSPTTVCLRRKTKCI
RMPGFCPGRSFCCMRTMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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