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Report for CCDS50030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50030.1 Public Mus musculus 17 Cramp1 23 108 98 CCDS HistoryNCBI Gene:57354Re-query CCDS DB by CCDS ID:50030.1Re-query CCDS DB by GeneID:57354See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50030.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073337.7 ENSMUSP00000073060.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073337.7Link to Ensembl Protein Viewer:ENSMUSP00000073060.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073337Re-query CCDS DB by Protein ID:ENSMUSP00000073060
Original member Current member EBI ENSMUST00000233774.1 ENSMUSP00000156906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233774.1Link to Ensembl Protein Viewer:ENSMUSP00000156906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233774Re-query CCDS DB by Protein ID:ENSMUSP00000156906
Original member Current member NCBI NM_020608.3 NP_065633.2 Accepted alive Link to Nucleotide Sequence:NM_020608.3Link to Protein Sequence:NP_065633.2Re-query CCDS DB by Nucleotide ID:NM_020608Re-query CCDS DB by Protein ID:NP_065633Link to BLAST:NP_065633.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065633.2 1285 Q6PG95 1285 100% 0 0

Chromosomal Locations for CCDS 50030.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24964782 24964946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24968926 24969071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24970415 24970579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24971377 24971608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24972336 24972401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24973081 24973259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24973504 24973608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24974705 24974786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24977332 24977406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24977496 24977677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24979486 24979663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24982224 24983396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24983944 24984025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24984975 24985098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24985522 24985607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24992270 24992318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24994586 24994669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24997453 24997606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25003212 25003405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25013688 25014024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3858 nt):
ATGACAGTGAAGTTGGGCGACGCCGGCAGCGGGGAGGAAGGGCTCAAGAAGCTGGGCAAGCGGACGGCCG
ATGAGGAGTCGCTGGACGGAGAGGGGCCCGGCGGCGCGGACGCGGCGGACAGCAGCAGCACAAAGAGGGA
CGGGCAGACCCCTCGGGCCTCCGGAGCCCCCGCGCCACCCAGAGGGCTGCCGACCCCGTCTCCACCGCAG
GGCAGCCCCCAGGACCAGCACCATTTCCTAAGGTCCAGCGTGCGACCCCAGAGCAAGAGGCCCAGGAAGG
ACGCACCCTGTGCTTTGGGCAGTGGTGGTGCCAGCGGTTCCGGGCCGCGAGGAAAAGGAAGTGACGGTGG
TGCATCATCTTCTGGAAACGTGTCTGGGGCTACCCCTGCCACTCCTGCAGGAGGCTCGCGCTCCTCCTCC
CGGAACATAGGATCTTCAGGGCCTGAGAAAGAAGAAGGAAAGAAGGTCCGAAGGCAGTGGGAGTCGTGGA
GCACCGAGGACAAGAACACCTTCTTCGAGGGACTGTATGAGCATGGAAAAGACTTTGAAGCCATTCAGAA
CAACATTGCTCTAAAGTACAAGAAGAAGGGCAAGCCTGCAAGCATGGTGAAGAACAAAGAGCAGGTCCGG
CATTTTTACTACCGCACCTGGCACAAGATTACCAAATACATTGACTTTGACAATGTGTTCTCTCGAGGGC
TGAAGAAGTCATCCCAGGAACTCTATGGTCTCATCTGCTATGGCGAGCTACGCAAGAAGATTGGGGGTTG
TATGGATGACAAGAATGCAACAAAGTTGAATGAACTCATTCAGGTTGGAGCCACCACAGTACGTTATAAA
GGGAGAAATCTCCGGATCAAGGCACCCATGTGCCGAGCCCTAAAGAAACTCTGTGATCCAGATGGTCTAA
GTGATGAAGAGGACCAGAAGCCAGTGCGCCTACCCCTGAAAGTCCCAGTAGAATTACAACCAAGGAACAA
CCACGCTTGGGCACGAGTACAGAGCCTGGCCCAGAACCCACGTCTCAGGATGATTGTGGAGCTACATAGA
AAAGTCTCTAGCCTCATTGAGTTCCTGAAGCAGAAGTGGGCACTCCATGAAGTACGAATTCGGAAGACAC
TTGAGGAGAGGCAGCTGCAGGGTTCAAGCACAGTGCAGACCCAGGAGAAGGTGGCATTGCACCTGTTCCC
AGGCGAGAACTGCACGCTGACACCACTACCCGGTGTAGCCCGTGTGGTACACTCCAAGGCCTTCTGCACT
GTACACTGGCAAGAGGGTGGCCGGTGCAAACAGGGCACTAAGGACATACACTCACTGCCTCCAGCACAGA
TCCTCGGCATCCAGAGTGGACAGGGAATAGCCCGGGGCCAGCTGAAGTGCCAGAGGAGCAGTGCTGAAGG
CAAGGGTGGGGGGCGGCTCCTTCCCACTGCAGATGCTTCACAGAGCTCAGGGGAAAGTTCCCCTGAGAGT
GCTCCTGCAGAGGGAGCAGCTCCAAGTCTGAGCAGCCCAGATGCCCCCGACAGGCCTCATGGGCTCCAGG
ACTCTGGACCACACCTTGAGAAGACCCCTGTGACAGCCCTTGCAGTGGGTAGGGACAGCCCTATTCAAGA
ATCTGGGGCCCTGCCGTGTCCCTGTGGCCAGCCCCCAGACTTGGAAGATGAACTCTCACTCCTTGACCCC
TTCCCCCGATACCTGAAGTCGTGCCAGGATCTCATCATCCCAGAGCAGTGCCGCCGTGCAGACACACGAT
CTGGGAGAGAGCATCCTCCTCTCGGCAGCGTAGCTTCCCCAGAGACCCTCACACCCAGCAGCGGGGCGGT
CGCTGACAGTGCTCCCCCTGGCCTGGACCCTCAACCTGGCACTGATCATCAACCTGACACCAGGCTTCAG
TCAGATATTTGTACTAAAGAGCTAGCGAACGCATCCTCTGAAGAGTCCCAGGAAAAAGGCAGCCCCTCAG
AACATCTGTCGTCTCAGGGACAGCCTGCTACCAGGCCTTCCAAGGAAGTCCCTGCCAGCCAGCTGGCCCA
GCAGCTACGTGAAGAAGGCTGGAGCTTGCAGACCTCTGAAAGCCTCACACTGGCTGAAGTCTACCTCATG
ATGGGCAAGCCGACCAAACTGCAGCTGGAGTATGATTGGCTGGCTGTGCTGGGCCCCGAGAGCCAGGCAC
CCACAGCACAGGGCCAGACTGCACTATCCCGCTCCTCGCCCTCAGCCCTCCACCAGCAACGCCTCCTGAG
CTGCCTTCTGAGGCTCATCTCCACTGAGGTCCACCCCAAGATGGCTTTTGAAGCAAACACAGCATCAACG
GCTTCAGTCAGGCCCACCCAGGAGGAACAGTCCACAACTCCACCAGGGAAGGTAGTGACCATCAACTCTC
GGAGTCCCCGCTGTTCTCGAAACCCATCTACCCTCCGAAGCAACAAGACTTTCCCATCTGCTTCTGCCCC
TTGCTCCCCAGGTTTGAGAAACCCCCCAAGGCCTCTCTTGGTGGCTGGTCCCTCCAGCACAGGAAGCAGT
GACTCAGATGGTGGCCTCTTTGCTGTCCCAACGACTTTGCCACCAAATAGTCGACATGGAAAGCTCTTCT
CTCCCAGTAAGGAGGCGGAGCTGACTTTTCGGCAGCACTTGGACTCCATCAGCATACAGTCAGACTTTTT
CTCACCAAAGCCCAAGAAACTACGGAAACGGCACTTAAGAAAGCCACTGGTGGTCCAGAGGACACTGCTC
CCTAGACCTTCTGAAAACCAGTCCCACAATGTGTGCTCCTTCTCCATCCTGTCTAACTCTCCTATAGCTG
GGAGAGGCTGGTTCCGGCCCATCCAGTCTTCTTTGACCAAAGCAGCTCTGTCTCGACCGATAGTGCCCAA
GGTCCTCCCATCTCAGGCCACCAGTCACCTGCCCAGTGCCATCGACTTAGCAGCTCAAAGTGCTGGCATC
ATCCCTGGAAGTCCCTTGCCAATTTTAGATACTGATGGCTCATCTGGCATCTCTCCACTGTCTTCAGAAC
AAGCAACCACTGCCATCTCGGGGCAGGGTGACACTGGACCACACCAGAACAGAGACCCTGTTACTGCTGT
AAGGGGCACTAATGACCCATTTATCAGTGTTACAAGACCAGAGCAGGAGCCAATGACAGATGGTTTCCAG
GGATCACCTGCTCTGACCTTACCTGAGCTGTCCAAGGCTAATCTCCAGAATGGCCTGTCCATACCTTTAC
CCTCATCGGAGAGCTCCAGCACCCGTCTCTCCCCACCCAATGTTTCTGCACTGCTGGACATATCCCTACC
TGGTCCACCTGAGGATGTTCTCTCACAGGGAGAACCTGCCACACAGATCAGTGACTCCATCATTGAAATT
GCCATCAGCTCTGGCCAGTACAGTGAAGGAGTTCCCCTTTCTCCAGCAAAACTGAACGGCAGTGACAGTT
CCAAGAGTCTTCCCTCCCCATCTAGCAGCCCCCAGCCCAACTGGATTGCCTCTCCCACTCATGATCCCCA
GTGGTATCCCAGTGACTCTGCAGATTCCTCACTCAGCAGCTTGTTCGCCAGCTTCATATCTCCAGAGAAG
AGCAGAAAGATGCTACCAACTACTGTTGGGGCCAACAGCGGCACATCTTTGCTTGGCCCTAGCTTGTTGG
ATGGAAATTCAAGGGACTCTTTTGTGTCCAGGTCTCTGGCTGATGTTGCAGAAGTGGTGGATTCCCAGTT
GGTGTGCATGATGAACGAGAACAGCATTGACTACATATCTCGGTTTAATGACCTGGCCCAAGAATTGTCC
ATCACTGAGCCTGGCCGCCGGGAGGTTCTTTTTGATGGTGGAGGAGGTGGTAATCCTGTTGGTGACCTCT
CTCAGTGA

Translation (1285 aa):
MTVKLGDAGSGEEGLKKLGKRTADEESLDGEGPGGADAADSSSTKRDGQTPRASGAPAPPRGLPTPSPPQ
GSPQDQHHFLRSSVRPQSKRPRKDAPCALGSGGASGSGPRGKGSDGGASSSGNVSGATPATPAGGSRSSS
RNIGSSGPEKEEGKKVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVR
HFYYRTWHKITKYIDFDNVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYK
GRNLRIKAPMCRALKKLCDPDGLSDEEDQKPVRLPLKVPVELQPRNNHAWARVQSLAQNPRLRMIVELHR
KVSSLIEFLKQKWALHEVRIRKTLEERQLQGSSTVQTQEKVALHLFPGENCTLTPLPGVARVVHSKAFCT
VHWQEGGRCKQGTKDIHSLPPAQILGIQSGQGIARGQLKCQRSSAEGKGGGRLLPTADASQSSGESSPES
APAEGAAPSLSSPDAPDRPHGLQDSGPHLEKTPVTALAVGRDSPIQESGALPCPCGQPPDLEDELSLLDP
FPRYLKSCQDLIIPEQCRRADTRSGREHPPLGSVASPETLTPSSGAVADSAPPGLDPQPGTDHQPDTRLQ
SDICTKELANASSEESQEKGSPSEHLSSQGQPATRPSKEVPASQLAQQLREEGWSLQTSESLTLAEVYLM
MGKPTKLQLEYDWLAVLGPESQAPTAQGQTALSRSSPSALHQQRLLSCLLRLISTEVHPKMAFEANTAST
ASVRPTQEEQSTTPPGKVVTINSRSPRCSRNPSTLRSNKTFPSASAPCSPGLRNPPRPLLVAGPSSTGSS
DSDGGLFAVPTTLPPNSRHGKLFSPSKEAELTFRQHLDSISIQSDFFSPKPKKLRKRHLRKPLVVQRTLL
PRPSENQSHNVCSFSILSNSPIAGRGWFRPIQSSLTKAALSRPIVPKVLPSQATSHLPSAIDLAAQSAGI
IPGSPLPILDTDGSSGISPLSSEQATTAISGQGDTGPHQNRDPVTAVRGTNDPFISVTRPEQEPMTDGFQ
GSPALTLPELSKANLQNGLSIPLPSSESSSTRLSPPNVSALLDISLPGPPEDVLSQGEPATQISDSIIEI
AISSGQYSEGVPLSPAKLNGSDSSKSLPSPSSSPQPNWIASPTHDPQWYPSDSADSSLSSLFASFISPEK
SRKMLPTTVGANSGTSLLGPSLLDGNSRDSFVSRSLADVAEVVDSQLVCMMNENSIDYISRFNDLAQELS
ITEPGRREVLFDGGGGGNPVGDLSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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