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Report for CCDS80406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80406.1 Public Mus musculus 5 Zcchc8 23 108 98 CCDS HistoryNCBI Gene:70650Re-query CCDS DB by CCDS ID:80406.1Re-query CCDS DB by GeneID:70650See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196282.4 ENSMUSP00000142363.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196282.4Link to Ensembl Protein Viewer:ENSMUSP00000142363.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196282Re-query CCDS DB by Protein ID:ENSMUSP00000142363
Original member Current member NCBI NM_027494.3 NP_081770.3 Accepted alive Link to Nucleotide Sequence:NM_027494.3Link to Protein Sequence:NP_081770.3Re-query CCDS DB by Nucleotide ID:NM_027494Re-query CCDS DB by Protein ID:NP_081770Link to BLAST:NP_081770.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081770.3 709 Q9CYA6 709 100% 0 0

Chromosomal Locations for CCDS 80406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123700344 123701122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123702563 123702680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123702993 123703079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123704523 123704641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123707269 123707411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123707992 123708134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123708572 123708632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123709195 123709260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123709382 123709485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123714066 123714143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123714625 123714730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123716984 123717058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123719492 123719534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123720723 123720930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2130 nt):
ATGGCGGCCGGTGTGGATTTTGGCGACCTAGAGCTCTTCGAGGCGTTTGACCCACCAGAGGAGTCGACGC
CGAAGCCCGTTCACACCCGGTTCAAGGACGACGAGGAGGAAGAGGACGACGACGACGACGAGAACGGGGT
GGGCGATGCGGAGCTGCAGGAGCAGCTCCGGCGCTGCGAGGCCACCATCGAGCAGCTCCGCGCCGAGAAT
CAAGAACTTAAAAGAAAGTTGAACATTCTGACAAGACCCAGTGGTATACTGGTGAGCAATACTAAGATAG
ATGGACCGTTACTACAAATTCTATTTATGAACAATGCTATCTCAAAGCAATACCACCAAGAAATAGAGGA
GTTTGTATCAAACTTAGTAAAACGATTTGAGGAACAGCAAAAAAATGACGTGGAAAAGACTTCCTTCAGC
CTTTTACCCCAGCCGTCCAGTGTTATGTTGGAAGAGGACCATAAAGTGGAAGAATCATGTGCCGTTAAAA
ACAACAAGGAAGCTTTTAGTGTTGTAGGAAGTGTCCTGTATTTTACTAATTTTTGCCTTGATAAATTGGG
GCAACCGCTACTAAATGAAAACCCTCAGCTTACGGAAGGATGGGAAATACCCAAGTACCAGCAAGTCTTC
AGCCACATTGTTCCTCTAGAAGGGCAAGAGATGCAAGTGAAGGCAAAAAGGCCAAAGCCTCACTGTTTCA
ACTGTGGTTCTGAAGAGCATCAGATGAAGGAATGCCCAATGCCTCGGAATGCTGCTCGGATCAGTGAGAA
GAGGAAAGAGTACATGGATGCCTGTGGCGAGGCCAGCGGCCAGAGCTTCCAGCAGCGCTATCATGCCGAA
GAAGTAGAAGAGAGATTTGGAAGATTCAAGCCAGGAGTTATTAGTGAGGAACTTCAAGATGCACTGGGTG
TGACAGACAAGAGTCTTCCCCCTTTCATCTACCGGATGCGCCAGCTGGGCTACCCACCGGGCTGGCTCAA
GGAGGCTGAACTGGAGAATTCTGGACTTGCACTCTATGATGGAAACGATGACGCTGATGGGGAAACAGAA
ACTGGAGAAATACAGAATAAAAATGTCACCTACGATCTCTCAAAATTGGTAAACTATCCAGGTTTTAATA
TATCTACTCCCAGAGGTATTCCAGATGAATGGAGAATGTTCGGTTCCATACCAATGCAGGCGTGTCAACA
GAAGGATGTGTTTGCCAGTTACCTTAATTCTAACATCCAGTCGCCGAGTATGAGATCTAGCGGCAAGCGG
TCTTCCTCGCAGTCCAGCCCTAACAGTCCAAAGAAGCAGCGAAAGGAGGGCAGTGCGGCGGCCTCCCCTG
CCGACATGGAGCTAGACTCAGATGTAGAGATTCCACCTGGTTCTCAGAGCAGCAAAGCATTTCAGTTCCA
ACCACCGTTGCCTCCCGGAACACCGCCTCCACTCCCACAGGGAACTCCCCCGCCTCTCTTCACCCCTCCA
CTCCCTAAGGGAACCCCACCACTGACTCCCAGTGACTCACCCCAGGCCCGACCCGCAGCCTCAGCCATGG
ATGAGGATGCCCTGACGCTGGAGGAGCTGGAAGAGCAGCAGAGGCAGATCTGGGCGGCTCTCCAGCAGGC
CGAGGGAGGGAATGGCGACTCAGATGTTCCTGGAGACACACCTTTAACTGGGAACTCAGTGGCCTCCTCC
CCGTGTCCAAACGAGTTTGACCTCCCTGTCCCCGAAGGAAAGGCCCTGGAAAAGCCAGTGCTGGCTGAGC
CCCAGGAACCAGCTGCTTCTGTAGACACAGCTGGACCCGAGCCATCCTGCAGCCCAGCAGCAGGGGCAGC
AGTGCTCTCTCAGAGAGAAGAGGAAGCTGCTGCTGAGGGGGGCCCGGGAGATGCTCTTCTCGACAATGGC
GGTGTGTTGAACATGAACATGAGCAATGGGAGCAACCAGCAGCCCATTCACCCGGACAGCCGGCCTCCGA
TGGCCCCAAAAACCCATAGCCCAGTACCTGACATGAGCAAGTTTGCCACTGGAATAACACCCTTTGAATT
TGAGAACATGGCTGAATCCACTGGAATGTACCTCAGGATAAGAAACCTGTTGAAGAATTCACCCCGAAAT
CAGCAGAAAAACAAAAAGACTTGTGAGTGA

Translation (709 aa):
MAAGVDFGDLELFEAFDPPEESTPKPVHTRFKDDEEEEDDDDDENGVGDAELQEQLRRCEATIEQLRAEN
QELKRKLNILTRPSGILVSNTKIDGPLLQILFMNNAISKQYHQEIEEFVSNLVKRFEEQQKNDVEKTSFS
LLPQPSSVMLEEDHKVEESCAVKNNKEAFSVVGSVLYFTNFCLDKLGQPLLNENPQLTEGWEIPKYQQVF
SHIVPLEGQEMQVKAKRPKPHCFNCGSEEHQMKECPMPRNAARISEKRKEYMDACGEASGQSFQQRYHAE
EVEERFGRFKPGVISEELQDALGVTDKSLPPFIYRMRQLGYPPGWLKEAELENSGLALYDGNDDADGETE
TGEIQNKNVTYDLSKLVNYPGFNISTPRGIPDEWRMFGSIPMQACQQKDVFASYLNSNIQSPSMRSSGKR
SSSQSSPNSPKKQRKEGSAAASPADMELDSDVEIPPGSQSSKAFQFQPPLPPGTPPPLPQGTPPPLFTPP
LPKGTPPLTPSDSPQARPAASAMDEDALTLEELEEQQRQIWAALQQAEGGNGDSDVPGDTPLTGNSVASS
PCPNEFDLPVPEGKALEKPVLAEPQEPAASVDTAGPEPSCSPAAGAAVLSQREEEAAAEGGPGDALLDNG
GVLNMNMSNGSNQQPIHPDSRPPMAPKTHSPVPDMSKFATGITPFEFENMAESTGMYLRIRNLLKNSPRN
QQKNKKTCE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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