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Report for CCDS51561.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51561.1 Public Mus musculus 5 Pramel48 23 108 98 CCDS HistoryNCBI Gene:320549Re-query CCDS DB by CCDS ID:51561.1Re-query CCDS DB by GeneID:320549See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51561.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094593.6 ENSMUSP00000092174.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094593.6Link to Ensembl Protein Viewer:ENSMUSP00000092174.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094593Re-query CCDS DB by Protein ID:ENSMUSP00000092174
Original member Current member EBI ENSMUST00000202481.1 ENSMUSP00000143927.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202481.1Link to Ensembl Protein Viewer:ENSMUSP00000143927.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202481Re-query CCDS DB by Protein ID:ENSMUSP00000143927
Original member Current member NCBI NM_001360017.1 NP_001346946.1 Accepted alive Link to Nucleotide Sequence:NM_001360017.1Link to Protein Sequence:NP_001346946.1Re-query CCDS DB by Nucleotide ID:NM_001360017Re-query CCDS DB by Protein ID:NP_001346946Link to BLAST:NP_001346946.1
Original member Current member NCBI NM_177187.4 NP_796161.3 Accepted alive Link to Nucleotide Sequence:NM_177187.4Link to Protein Sequence:NP_796161.3Re-query CCDS DB by Nucleotide ID:NM_177187Re-query CCDS DB by Protein ID:NP_796161Link to BLAST:NP_796161.3

Chromosomal Locations for CCDS 51561.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 95481613 95481899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95482553 95483143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 95484104 95484671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGAGTGGTCAGACCCCACCCACACTCCAGAAGCTAGCAAGGCAGACACTGCTGAGAGATGAGGCTTTGG
CCATATCCTCTCTGGAGGAGCTGCCAGCTGTGGTCTTCCCACCACTGTTCCAAGAGGCCTTTGCTGGCAG
ACTCAACAAGCTCATAAAGGCAATGGTGGCAGCCTGGCCTTTCCACGATCTCCCTGTGGGGCCATTGATA
AATATGCATAACCTGGAAACCTTGCAAGCTCTGCTAGATGGAGTAGACATGAGACTAACAAGAAAATTTC
ACCCCTGGAGGCCAAAACTTCAGGTTCTCGACATGAGAAACGTGGACCATGTCTTCTGGAACATATGGAG
CGATGCAAATGACAGTGACTCTGATGCAGAGACCTTGGATGAAAAGCAAGTAGTGAAGGCCCCTCGCAGA
TATGCACTGAGGCAGCGTCTGAAGATCATAGTTGATCTGTCAATCAGTTCTCAGCTCAATGAACAAAAAG
CATATTTCTTGAATTGGGCCAAGCAGAGAAAGGGGTCCATAAATTTCTGCTGTACAAAGATGAAGATCTG
GGATGCACCAGACGAAGTTATCAGAGAAATCATGAATGTTTTCCATCCAGAGCACATTACAGAATTAGAA
CTGTATACCGACTGGACTCTGTTGCGGCTGGCACATTTTGCTCCCTACATTGGGCAGATGAAAAATCTTG
AAAGAGTCTTCCTGGCACCACTCCACAAGAATACCTCCCCTATTATGAATTTGACAAGGGACTCAAAAGT
CAAGTGTATTAAAAAAATTATTTCTCAGTTTTCCAAATTCAACTGTCTCCAACATGTCTTCATGAAACGT
GTCCATTTTCTCAGAGACCACCTGCATCAGATACTAGGGTGCCTGAGGACGCCCTTGCAGACCCTCTCCA
TCACTCACTGCCTAATTTCACAGACAGACTTGGATTCCTTTTCCTGCTGTCACAACCTTTTTAAGTTAAA
AAATCTGGAAATCAGAGGAGTGACATTATTTGCTCTCGATCTTATGCCTCTGAGAGGTCTCCTAGGAAAA
CTGGCAGGTACTCTTGAGTCTCTGGATTTTCAGTGGTGTAGCATGAAGGACTCCCAGCTCATTGTCCTCT
TACCTGCCCTCAGTCAATGCTCTCAGCTCAACCAGATCAACTTCTACAGCAATGACTTCTCCATGGCCAT
CCTGAAGGACCTTTTGCAGCACACAGCCAACTGGAGCAAGATGAATGTGGAACAATACCCTGTCCCTCTG
GAGTGCTATGATGCATTGGGTCATGTCTCCAGAGAAAGATTTGTGGAACTTTGTCAGGAGCTCATGGATA
CCCTCAGGGCCAAAAGAGAGCCTAAGAGCATATCTTTTGCAACAAATGTCTGCCAAAATTGTGGCAAGAC
CTGTGTCTATGGCCAGGGGGCAAGACTTTGTTCCTGTTTGCAGTAA

Translation (481 aa):
MSGQTPPTLQKLARQTLLRDEALAISSLEELPAVVFPPLFQEAFAGRLNKLIKAMVAAWPFHDLPVGPLI
NMHNLETLQALLDGVDMRLTRKFHPWRPKLQVLDMRNVDHVFWNIWSDANDSDSDAETLDEKQVVKAPRR
YALRQRLKIIVDLSISSQLNEQKAYFLNWAKQRKGSINFCCTKMKIWDAPDEVIREIMNVFHPEHITELE
LYTDWTLLRLAHFAPYIGQMKNLERVFLAPLHKNTSPIMNLTRDSKVKCIKKIISQFSKFNCLQHVFMKR
VHFLRDHLHQILGCLRTPLQTLSITHCLISQTDLDSFSCCHNLFKLKNLEIRGVTLFALDLMPLRGLLGK
LAGTLESLDFQWCSMKDSQLIVLLPALSQCSQLNQINFYSNDFSMAILKDLLQHTANWSKMNVEQYPVPL
ECYDALGHVSRERFVELCQELMDTLRAKREPKSISFATNVCQNCGKTCVYGQGARLCSCLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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