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Report for CCDS3250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3250.1 Public Homo sapiens 3 HTR3C 24 110 108 CCDS HistoryNCBI Gene:170572Re-query CCDS DB by CCDS ID:3250.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3250.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318351.2 ENSP00000322617.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318351.2Link to Ensembl Protein Viewer:ENSP00000322617.1Re-query CCDS DB by Nucleotide ID:ENST00000318351Re-query CCDS DB by Protein ID:ENSP00000322617
Original member Current member NCBI NM_130770.3 NP_570126.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_130770.3Link to Protein Sequence:NP_570126.2Re-query CCDS DB by Nucleotide ID:NM_130770Re-query CCDS DB by Protein ID:NP_570126Link to BLAST:NP_570126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570126.2 447 Q8WXA8 447 100% 0 0

Chromosomal Locations for CCDS 3250.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 184053081 184053147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184054721 184054887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184055312 184055356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184056177 184056286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184056875 184057044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184058427 184058587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184059436 184059640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184059828 184060043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 184060150 184060352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGGAAGGAGGGTGGCCTGCAAGGCAGAGTGCCCTCCTCTGCCTCACTGTCAGTCTTCTGCTTCAAGGAA
GAGGCGACGCTTTTACCATCAATTGCTCAGGCTTTGACCAGCATGGGGTTGACCCTGCTGTCTTCCAAGC
AGTGTTTGACAGAAAGGCCTTCCGTCCATTCACCAACTACAGCATCCCTACCCGTGTCAACATCTCCTTC
ACCCTGTCTGCCATCCTGGGAGTGGATGCACAGCTCCAGCTGCTGACATCATTCCTGTGGATGGATTTGG
TATGGGACAATCCTTTCATTAATTGGAACCCAAAAGAGTGTGTTGGCATCAATAAACTCACAGTATTAGC
TGAAAACCTGTGGCTCCCAGACATCTTCATCGTGGAATCCATGGATGTGGATCAGACGCCTTCCGGTCTC
ACTGCCTATATCAGCAGTGAAGGTCGAATTAAGTATGATAAGCCAATGAGGGTGACCAGCATCTGTAACC
TGGACATCTTCTACTTCCCTTTTGACCAACAGAACTGTACCTTCACCTTCAGTTCTTTCCTCTACACAGT
GGACAGCATGCTGCTGGGCATGGACAAGGAGGTGTGGGAGATCACAGACACGTCTCGCAAAGTCATCCAA
ACCCAGGGGGAGTGGGAGCTCTTGGGCATCAACAAGGCCACCCCAAAGATGTCCATGGGCAACAACCTAT
ATGACCAGATCATGTTTTATGTGGCCATCAGGCGCAGGCCAAGCCTCTACATCATAAACCTGCTGGTGCC
CAGTAGCTTTCTGGTTGCCATTGATGCCCTCAGCTTCTACCTGCCAGCAGAGAGCGAGAATCGTGCCCCA
TTCAAGATAACACTTCTGCTGGGCTACAACGTCTTCCTGCTCATGATGAATGACTTGCTCCCTGCCAGTG
GCACCCCCCTCATCAGTGTCTACTTCGCCCTGTGCCTGTCCCTGATGGTGGTCAGCCTGCTGGAGACCGT
CTTCATTACCTACCTGCTGCACGTGGCCACCACCCAGCCCCCACCCATGCCTAGGTGGCTTCACTCCCTG
CTGCTCCACTGCACCAGCCCAGGGAGATGCTGTCCCACTGCGCCCCAGAAGGGAAATAAGGGCCTGGGTC
TCACCCTCACCCACCTGCCTGGCCCAAAGGAGCCGGGGGAGTTAGCAGGGAAGAAGCTGGGACCCAGAGA
GACCGAGCCAGATGGGGGCTCAGGATGGACAAAGACCCAGCTAATGGAGCTGTGGGTGCAGTTCAGCCAC
GCGATGGACACCCTGCTCTTCCGCCTCTACCTGCTCTTCATGGCCTCCTCCATCCTTACTGTCATTGTCC
TCTGGAACACCTAG

Translation (447 aa):
MEGGWPARQSALLCLTVSLLLQGRGDAFTINCSGFDQHGVDPAVFQAVFDRKAFRPFTNYSIPTRVNISF
TLSAILGVDAQLQLLTSFLWMDLVWDNPFINWNPKECVGINKLTVLAENLWLPDIFIVESMDVDQTPSGL
TAYISSEGRIKYDKPMRVTSICNLDIFYFPFDQQNCTFTFSSFLYTVDSMLLGMDKEVWEITDTSRKVIQ
TQGEWELLGINKATPKMSMGNNLYDQIMFYVAIRRRPSLYIINLLVPSSFLVAIDALSFYLPAESENRAP
FKITLLLGYNVFLLMMNDLLPASGTPLISVYFALCLSLMVVSLLETVFITYLLHVATTQPPPMPRWLHSL
LLHCTSPGRCCPTAPQKGNKGLGLTLTHLPGPKEPGELAGKKLGPRETEPDGGSGWTKTQLMELWVQFSH
AMDTLLFRLYLLFMASSILTVIVLWNT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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