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Report for CCDS17314.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17314.2 Public Mus musculus 3 Bbs7 23 108 98 CCDS HistoryNCBI Gene:71492Re-query CCDS DB by CCDS ID:17314.2Re-query CCDS DB by GeneID:71492See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 17314.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108156.8 ENSMUSP00000103791.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108156.8Link to Ensembl Protein Viewer:ENSMUSP00000103791.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108156Re-query CCDS DB by Protein ID:ENSMUSP00000103791
Original member Current member NCBI NM_027810.3 NP_082086.2 Accepted alive Link to Nucleotide Sequence:NM_027810.3Link to Protein Sequence:NP_082086.2Re-query CCDS DB by Nucleotide ID:NM_027810Re-query CCDS DB by Protein ID:NP_082086Link to BLAST:NP_082086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082086.2 715 Q8K2G4-1 715 100% 0 0

Chromosomal Locations for CCDS 17314.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 36573489 36573622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36575294 36575417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36575545 36575648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36575743 36575852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36578396 36578560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36582626 36582765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36590652 36590717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36592365 36592439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36594368 36594560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36598266 36598368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36599339 36599423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36602829 36602959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36604406 36604522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36605684 36605756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36607521 36607707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36610180 36610355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36610566 36610628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36612012 36612077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 36613250 36613285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2148 nt):
ATGGATCTGACGTTAAGCCGGGCAGACTACCTCCAGGTCGGAGTGACCTCTCAGAAAACTATGAAGTTGC
TTCCTACCTCAAGACAAAGGGCTACACAAAAGGTGGTTGTTGGAGATCAAGATGGGGTAGTGATATGCTT
CGGCGTGAAGAAAGGAGAAGCTGTGCCAGTGTTCAAGACTTTACCAGGGCAGAAGATCTCGAGGCTGGAA
CTAGGAGGGGCCGTCAACACGCCTCAGGAGAAAATCTTCATTGCTGCAGGGTCCGAGATTAGAGGCTTTA
CAAAGAGAGGGAAACAGTTTCTCTCTTTTGAAACTAACCTCACGGAAAGCATTAAAGCTATGTACATATC
TGGCTCTGACCTCTTCCTCAGTGCAAGCTACATCTATAATCACTACTGTGATTGCAAAGACCAAAATTAT
TACCTTTCTGGGGACAAAATCAATGATGTCATCTGCCTTCCTGTGGAAAAGTTATCTCGCGTGACACCGG
TGTTGGCCTGCCAGGACCGGGTGCTCCGAGTCTTACAGGGATCTGATGTGATGTATGAAATTGAGGTTCC
TGGTCCACCCACCGTCTTAGCACTGCATAATGGAGATGGAGGTGACTCTGGAGAAGGACTTCTGTTCGGC
ACATCAGATGGAAGACTTGGGCTTATTCAGATCACAACATCCAAACCAATACACAAATGGGAAATTCGAA
ATGACAAAAAGCGGGGAGGTATCTTGTGTGTTGACAGCTTTGATATCATGGGTGATGGGGTTAAAGATTT
ACTTGTTGGGAGAGATGATGGAATGGTGGAAGTATATAGTTTTGAAAATGCAAATGAACCTGTGCTACGA
TTTGATCAGATGCTGTCTGAAAGCGTCACCTCCATCCAGGGTGGCTGTGTGGGAAAAGATGGCTATGATG
AAATTGTGCTGGCCACATATTCAGGCTGGGTGACAGGGCTGACTACAGAGCCAACTCATAAAGAAAGTGG
ACCAGGAGAAGAACTAAAACTTAATCAGGAAATGCAGAATAAGATTTCTTCTTTAAGGTCTGAAATAGAA
CACCTGCAGTTTAAGGTGCTTCAGGAGAGAGAAAATTACCAACAGTCTTCACAGTCAAGCCAAGCAAAGT
CAACAGTCCCTTCATTCAGTATAAATGACAAGTTCACATTGAATAAAGAAGATGCTAGCTACAGCCTCGT
CTTAGAGGTGCGGACTGCAATAGACAATGTCCTAATACAGAGTGATGTTCCAATAGATCTACTTGATGTG
GACAAGAATTCTGCTGTTGTGAGCTTCAGCAGCTGTGACACAGAGTCAAACGACAACTTTCTTCTTGCTA
CTTATCGGTGCCAGGCAAATACCACCAGGCTGGAGCTCAAGATTCGTTCAATTGAAGGCCAGTATGGCAC
ACTCCAGGCATATGTGACTCCAAGAATCCAACCAAAAACCTGTCAGGTTCGCCAATACCACATCAAACCT
CTATCACTCCATCAAAGAACTCACTTTATTGACCATGACAGGCCTATGAACACACTGACTCTAACAGGCC
AGTTCAGCTTTGCTGAAGTTCACTCCTGGGTGGTGTTCTGCCTGCCTGAAGTTCCTGAAAAGCCTCCAGC
AGGGGAATGTGCAACATTTTACTTTCAGAATACCTTTCTGGATACACAACTTGAGTGTGTATACAGGAAA
GGAGAAGGAGTTTTTAAATCTGACAACATTTCTACAATATCCATCCTAAAAGATGTGCTTTCTAAAGAAG
CTACAAAAAGGAAAATTAATCTCAACATATCATACGAGATAAACGAGGTGTCTGTCAAGCACACTTTAAA
GCTAATTCACCCGAAGCTGGAGTATCAGCTGCTTCTGGCTAAGAAAGTGCAGTTAATCGATGCCCTGAAG
GAATTGCAGGTTCATGAGGGAAATACAGACTTTCTGACTCCAGAGTACCGATGTATTCTAGAAGAGGCAG
ATCATCTACAAGAGGAATACAAAAAGCAGCCTGCACATCTTGAAAGACTCTATGGTATGATTACTGATCT
TTTTATAGATAAATTTAAGTTCAAAGGCACTAATGTAAAAACCAAAGTACCCATGCTCCTGGAGATTCTC
GACAGCTACGACCAGAACACACTGATTTCTTTCTTCGATGCAGCATGA

Translation (715 aa):
MDLTLSRADYLQVGVTSQKTMKLLPTSRQRATQKVVVGDQDGVVICFGVKKGEAVPVFKTLPGQKISRLE
LGGAVNTPQEKIFIAAGSEIRGFTKRGKQFLSFETNLTESIKAMYISGSDLFLSASYIYNHYCDCKDQNY
YLSGDKINDVICLPVEKLSRVTPVLACQDRVLRVLQGSDVMYEIEVPGPPTVLALHNGDGGDSGEGLLFG
TSDGRLGLIQITTSKPIHKWEIRNDKKRGGILCVDSFDIMGDGVKDLLVGRDDGMVEVYSFENANEPVLR
FDQMLSESVTSIQGGCVGKDGYDEIVLATYSGWVTGLTTEPTHKESGPGEELKLNQEMQNKISSLRSEIE
HLQFKVLQERENYQQSSQSSQAKSTVPSFSINDKFTLNKEDASYSLVLEVRTAIDNVLIQSDVPIDLLDV
DKNSAVVSFSSCDTESNDNFLLATYRCQANTTRLELKIRSIEGQYGTLQAYVTPRIQPKTCQVRQYHIKP
LSLHQRTHFIDHDRPMNTLTLTGQFSFAEVHSWVVFCLPEVPEKPPAGECATFYFQNTFLDTQLECVYRK
GEGVFKSDNISTISILKDVLSKEATKRKINLNISYEINEVSVKHTLKLIHPKLEYQLLLAKKVQLIDALK
ELQVHEGNTDFLTPEYRCILEEADHLQEEYKKQPAHLERLYGMITDLFIDKFKFKGTNVKTKVPMLLEIL
DSYDQNTLISFFDAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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