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Report for CCDS47363.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47363.1 Public Homo sapiens 6 SLC22A23 24 110 108 CCDS HistoryNCBI Gene:63027Re-query CCDS DB by CCDS ID:47363.1Re-query CCDS DB by GeneID:63027See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47363.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000406686.8 ENSP00000385028.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000406686.8Link to Ensembl Protein Viewer:ENSP00000385028.3Re-query CCDS DB by Nucleotide ID:ENST00000406686Re-query CCDS DB by Protein ID:ENSP00000385028
Original member Current member NCBI NM_015482.2 NP_056297.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015482.2Link to Protein Sequence:NP_056297.1Re-query CCDS DB by Nucleotide ID:NM_015482Re-query CCDS DB by Protein ID:NP_056297Link to BLAST:NP_056297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056297.1 686 A1A5C7-1 686 100% 0 0

Chromosomal Locations for CCDS 47363.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 3273055 3273412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3283852 3283975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3285079 3285111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3286859 3287091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3289764 3289866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3298091 3298218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3323834 3324002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3410188 3410342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3415752 3415855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 3455906 3456559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2061 nt):
ATGGCCATAGACCGGCGGCGCGAGGCGGCGGGCGGCGGGCCTGGGCGGCAGCCGGCCCCGGCCGAGGAGA
ACGGCTCCCTGCCGCCCGGGGACGCGGCGGCCTCGGCGCCCCTCGGGGGACGCGCGGGCCCCGGCGGCGG
CGCGGAGATCCAGCCGCTGCCCCCACTGCATCCTGGAGGCGGCCCGCACCCGAGCTGCTGCTCCGCGGCT
GCGGCCCCGAGCCTCTTGTTGCTGGACTATGACGGGTCGGTGCTGCCCTTCCTCGGGGGCCTGGGCGGGG
GCTATCAGAAGACCCTCGTGCTGCTCACCTGGATCCCGGCGCTGTTCATCGGCTTCAGCCAGTTCTCGGA
CTCGTTCCTCCTGGACCAGCCCAACTTCTGGTGCCGCGGGGCCGGCAAAGGCACCGAGCTGGCAGGGGTC
ACCACCACAGGCCGGGGCGGGGACATGGGCAACTGGACCAGCCTCCCCACCACCCCCTTCGCCACTGCCC
CCTGGGAGGCTGCGGGCAACCGGAGCAACAGCAGCGGCGCGGACGGAGGCGACACACCACCCCTGCCATC
CCCTCCGGACAAGGGGGACAACGCCTCCAACTGTGACTGCCGCGCATGGGACTACGGCATCCGCGCCGGC
CTCGTCCAGAACGTGGTCAGCAAGTGGGATCTTGTGTGTGATAATGCCTGGAAGGTCCATATCGCTAAGT
TCTCCTTACTGGTTGGATTAATCTTTGGCTACCTAATAACTGGATGCATTGCTGACTGGGTCGGCCGGCG
GCCTGTGCTGCTGTTTTCCATCATCTTCATTCTGATCTTTGGACTGACTGTGGCACTGTCAGTGAATGTG
ACAATGTTCAGCACACTCAGGTTCTTTGAAGGATTTTGCCTGGCTGGAATCATTCTCACCTTGTATGCTT
TACGAATAGAGCTGTGCCCCCCTGGAAAACGGTTCATGATTACGATGGTGGCGAGCTTCGTGGCCATGGC
GGGCCAGTTCCTCATGCCTGGGCTAGCCGCCCTGTGCCGGGATTGGCAGGTGCTGCAGGCCCTCATCATC
TGCCCCTTCCTGCTCATGCTGCTCTACTGGTCGATATTCCCCGAGTCCCTCCGGTGGCTAATGGCCACCC
AGCAGTTTGAGTCTGCAAAGAGGCTGATCCTCCACTTCACACAGAAGAATCGCATGAACCCTGAGGGCGA
CATCAAGGGTGTGATACCAGAGCTGGAGAAAGAGCTTTCCCGGAGGCCCAAGAAGGTCTGCATCGTGAAG
GTGGTGGGGACACGGAACCTGTGGAAGAACATTGTGGTCCTGTGTGTGAACTCGCTGACGGGGTACGGGA
TCCACCACTGCTTTGCCAGGAGCATGATGGGCCACGAGGTGAAGGTGCCGCTCCTGGAGAACTTCTATGC
TGACTACTATACCACGGCCAGCATCGCGCTGGTGTCCTGCCTGGCCATGTGCGTGGTGGTCCGATTCCTC
GGGCGCAGGGGAGGGCTGCTGCTCTTCATGATCCTCACCGCCCTGGCCTCACTCCTGCAGCTCGGCCTCC
TCAACCTGATTGGAAAGTACAGCCAGCACCCAGACTCAGGGATGAGTGACAGCGTCAAGGACAAATTTTC
CATCGCGTTTTCCATCGTGGGCATGTTTGCCTCCCATGCGGTGGGGAGCCTCAGCGTGTTCTTCTGTGCG
GAGATCACCCCGACGGTGATAAGGTGTGGCGGGCTGGGGCTGGTGCTGGCCAGCGCGGGCTTCGGCATGC
TGACGGCACCCATCATCGAGCTGCACAACCAGAAAGGCTACTTCCTGCACCACATCATCTTTGCCTGCTG
CACGCTCATCTGCATCATCTGCATCCTCCTGCTGCCCGAGAGCAGGGACCAGAACCTGCCTGAGAACATT
TCTAACGGGGAGCACTACACGCGCCAGCCGCTGCTGCCGCACAAGAAGGGGGAGCAGCCACTGCTGCTCA
CCAACGCCGAGCTCAAGGACTACTCGGGCCTCCACGATGCCGCAGCCGCGGGTGACACACTGCCCGAGGG
TGCCACGGCCAACGGCATGAAGGCCATGTAG

Translation (686 aa):
MAIDRRREAAGGGPGRQPAPAEENGSLPPGDAAASAPLGGRAGPGGGAEIQPLPPLHPGGGPHPSCCSAA
AAPSLLLLDYDGSVLPFLGGLGGGYQKTLVLLTWIPALFIGFSQFSDSFLLDQPNFWCRGAGKGTELAGV
TTTGRGGDMGNWTSLPTTPFATAPWEAAGNRSNSSGADGGDTPPLPSPPDKGDNASNCDCRAWDYGIRAG
LVQNVVSKWDLVCDNAWKVHIAKFSLLVGLIFGYLITGCIADWVGRRPVLLFSIIFILIFGLTVALSVNV
TMFSTLRFFEGFCLAGIILTLYALRIELCPPGKRFMITMVASFVAMAGQFLMPGLAALCRDWQVLQALII
CPFLLMLLYWSIFPESLRWLMATQQFESAKRLILHFTQKNRMNPEGDIKGVIPELEKELSRRPKKVCIVK
VVGTRNLWKNIVVLCVNSLTGYGIHHCFARSMMGHEVKVPLLENFYADYYTTASIALVSCLAMCVVVRFL
GRRGGLLLFMILTALASLLQLGLLNLIGKYSQHPDSGMSDSVKDKFSIAFSIVGMFASHAVGSLSVFFCA
EITPTVIRCGGLGLVLASAGFGMLTAPIIELHNQKGYFLHHIIFACCTLICIICILLLPESRDQNLPENI
SNGEHYTRQPLLPHKKGEQPLLLTNAELKDYSGLHDAAAAGDTLPEGATANGMKAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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