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Report for CCDS46873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46873.1 Public Homo sapiens 3 POU1F1 24 110 108 CCDS HistoryNCBI Gene:5449Re-query CCDS DB by CCDS ID:46873.1Re-query CCDS DB by GeneID:5449See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46873.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000344265.8 ENSP00000342931.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000344265.8Link to Ensembl Protein Viewer:ENSP00000342931.3Re-query CCDS DB by Nucleotide ID:ENST00000344265Re-query CCDS DB by Protein ID:ENSP00000342931
Original member Current member NCBI NM_001122757.3 NP_001116229.1 Accepted alive Link to Nucleotide Sequence:NM_001122757.3Link to Protein Sequence:NP_001116229.1Re-query CCDS DB by Nucleotide ID:NM_001122757Re-query CCDS DB by Protein ID:NP_001116229Link to BLAST:NP_001116229.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001116229.1 317 P28069-2 317 100% 0 0

Chromosomal Locations for CCDS 46873.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87259894 87260104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87261273 87261333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87262071 87262235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87264288 87264512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87273347 87273496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87276321 87276462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGTTGCCAAGCTTTTACTTCGGCTGATACCTTTATACCTCTGAATTCTGACGCCTCTGCAACTCTGC
CTCTGATAATGCATCACAGTGCTGCCGAGTGTCTACCAGTCTCCAACCATGCCACCAATGTGATGTCTAC
AGTCCCATCTATTTTGTCTTTGATCCAAACTCCTAAATGTTTGTGCACACATTTCTCGGTGACAACGTTG
GGAAACACAGCAACAGGACTTCATTATTCTGTTCCTTCCTGTCATTATGGAAACCAGCCATCAACCTATG
GAGTGATGGCAGGTAGTTTAACCCCTTGTCTTTATAAATTTCCTGACCACACCTTGAGTCATGGATTTCC
TCCTATACACCAGCCTCTTCTGGCAGAGGACCCCACAGCTGCTGATTTCAAGCAGGAACTCAGGCGGAAA
AGTAAATTGGTGGAAGAGCCAATAGACATGGATTCTCCAGAAATCAGAGAACTTGAAAAGTTTGCCAATG
AATTTAAAGTGAGACGAATTAAATTAGGATACACCCAGACAAATGTTGGGGAGGCCCTGGCAGCTGTGCA
TGGCTCTGAATTCAGTCAAACAACAATCTGCCGATTTGAAAATCTGCAGCTCAGCTTTAAAAATGCATGC
AAACTGAAAGCAATATTATCCAAATGGCTGGAGGAAGCTGAGCAAGTAGGAGCTTTGTACAATGAAAAAG
TGGGAGCAAATGAAAGGAAAAGAAAACGAAGAACAACTATAAGCATTGCTGCTAAAGATGCTCTGGAGAG
ACACTTTGGAGAACAGAATAAACCTTCTTCTCAAGAGATCATGAGGATGGCTGAAGAACTGAATCTGGAG
AAAGAAGTAGTAAGAGTTTGGTTTTGCAACCGGAGGCAGAGAGAAAAACGGGTGAAAACAAGTCTGAATC
AGAGTTTATTTTCTATTTCTAAGGAACATCTTGAGTGCAGATAA

Translation (317 aa):
MSCQAFTSADTFIPLNSDASATLPLIMHHSAAECLPVSNHATNVMSTVPSILSLIQTPKCLCTHFSVTTL
GNTATGLHYSVPSCHYGNQPSTYGVMAGSLTPCLYKFPDHTLSHGFPPIHQPLLAEDPTAADFKQELRRK
SKLVEEPIDMDSPEIRELEKFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNAC
KLKAILSKWLEEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHFGEQNKPSSQEIMRMAEELNLE
KEVVRVWFCNRRQREKRVKTSLNQSLFSISKEHLECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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