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Report for CCDS9925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9925.1 Public Homo sapiens 14 SERPINA1 24 110 108 CCDS HistoryNCBI Gene:5265Re-query CCDS DB by CCDS ID:9925.1Re-query CCDS DB by GeneID:5265See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9925.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355814.8 ENSP00000348068.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355814.8Link to Ensembl Protein Viewer:ENSP00000348068.4Re-query CCDS DB by Nucleotide ID:ENST00000355814Re-query CCDS DB by Protein ID:ENSP00000348068
Original member Current member EBI ENST00000393087.9 ENSP00000376802.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393087.9Link to Ensembl Protein Viewer:ENSP00000376802.4Re-query CCDS DB by Nucleotide ID:ENST00000393087Re-query CCDS DB by Protein ID:ENSP00000376802
Original member Current member EBI ENST00000393088.8 ENSP00000376803.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393088.8Link to Ensembl Protein Viewer:ENSP00000376803.4Re-query CCDS DB by Nucleotide ID:ENST00000393088Re-query CCDS DB by Protein ID:ENSP00000376803
Original member Current member EBI ENST00000404814.8 ENSP00000385960.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404814.8Link to Ensembl Protein Viewer:ENSP00000385960.4Re-query CCDS DB by Nucleotide ID:ENST00000404814Re-query CCDS DB by Protein ID:ENSP00000385960
Original member Current member EBI ENST00000440909.5 ENSP00000390299.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440909.5Link to Ensembl Protein Viewer:ENSP00000390299.1Re-query CCDS DB by Nucleotide ID:ENST00000440909Re-query CCDS DB by Protein ID:ENSP00000390299
Original member Current member EBI ENST00000437397.5 ENSP00000408474.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437397.5Link to Ensembl Protein Viewer:ENSP00000408474.1Re-query CCDS DB by Nucleotide ID:ENST00000437397Re-query CCDS DB by Protein ID:ENSP00000408474
Original member Current member EBI ENST00000448921.5 ENSP00000416066.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448921.5Link to Ensembl Protein Viewer:ENSP00000416066.1Re-query CCDS DB by Nucleotide ID:ENST00000448921Re-query CCDS DB by Protein ID:ENSP00000416066
Original member Current member EBI ENST00000449399.7 ENSP00000416354.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449399.7Link to Ensembl Protein Viewer:ENSP00000416354.3Re-query CCDS DB by Nucleotide ID:ENST00000449399Re-query CCDS DB by Protein ID:ENSP00000416354
Original member Current member EBI ENST00000636712.1 ENSP00000490054.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636712.1Link to Ensembl Protein Viewer:ENSP00000490054.1Re-query CCDS DB by Nucleotide ID:ENST00000636712Re-query CCDS DB by Protein ID:ENSP00000490054
Original member Current member NCBI NM_000295.5 NP_000286.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000295.5Link to Protein Sequence:NP_000286.3Re-query CCDS DB by Nucleotide ID:NM_000295Re-query CCDS DB by Protein ID:NP_000286Link to BLAST:NP_000286.3
Original member Current member NCBI NM_001002235.3 NP_001002235.1 Accepted alive Link to Nucleotide Sequence:NM_001002235.3Link to Protein Sequence:NP_001002235.1Re-query CCDS DB by Nucleotide ID:NM_001002235Re-query CCDS DB by Protein ID:NP_001002235Link to BLAST:NP_001002235.1
Original member Current member NCBI NM_001002236.3 NP_001002236.1 Accepted alive Link to Nucleotide Sequence:NM_001002236.3Link to Protein Sequence:NP_001002236.1Re-query CCDS DB by Nucleotide ID:NM_001002236Re-query CCDS DB by Protein ID:NP_001002236Link to BLAST:NP_001002236.1
Original member Current member NCBI NM_001127700.2 NP_001121172.1 Accepted alive Link to Nucleotide Sequence:NM_001127700.2Link to Protein Sequence:NP_001121172.1Re-query CCDS DB by Nucleotide ID:NM_001127700Re-query CCDS DB by Protein ID:NP_001121172Link to BLAST:NP_001121172.1
Original member Current member NCBI NM_001127701.2 NP_001121173.1 Accepted alive Link to Nucleotide Sequence:NM_001127701.2Link to Protein Sequence:NP_001121173.1Re-query CCDS DB by Nucleotide ID:NM_001127701Re-query CCDS DB by Protein ID:NP_001121173Link to BLAST:NP_001121173.1
Original member Current member NCBI NM_001127702.2 NP_001121174.1 Accepted alive Link to Nucleotide Sequence:NM_001127702.2Link to Protein Sequence:NP_001121174.1Re-query CCDS DB by Nucleotide ID:NM_001127702Re-query CCDS DB by Protein ID:NP_001121174Link to BLAST:NP_001121174.1
Original member Current member NCBI NM_001127703.2 NP_001121175.1 Accepted alive Link to Nucleotide Sequence:NM_001127703.2Link to Protein Sequence:NP_001121175.1Re-query CCDS DB by Nucleotide ID:NM_001127703Re-query CCDS DB by Protein ID:NP_001121175Link to BLAST:NP_001121175.1
Original member Current member NCBI NM_001127704.2 NP_001121176.1 Accepted alive Link to Nucleotide Sequence:NM_001127704.2Link to Protein Sequence:NP_001121176.1Re-query CCDS DB by Nucleotide ID:NM_001127704Re-query CCDS DB by Protein ID:NP_001121176Link to BLAST:NP_001121176.1
Original member Current member NCBI NM_001127705.2 NP_001121177.1 Accepted alive Link to Nucleotide Sequence:NM_001127705.2Link to Protein Sequence:NP_001121177.1Re-query CCDS DB by Nucleotide ID:NM_001127705Re-query CCDS DB by Protein ID:NP_001121177Link to BLAST:NP_001121177.1
Original member Current member NCBI NM_001127706.2 NP_001121178.1 Accepted alive Link to Nucleotide Sequence:NM_001127706.2Link to Protein Sequence:NP_001121178.1Re-query CCDS DB by Nucleotide ID:NM_001127706Re-query CCDS DB by Protein ID:NP_001121178Link to BLAST:NP_001121178.1
Original member Current member NCBI NM_001127707.2 NP_001121179.1 Accepted alive Link to Nucleotide Sequence:NM_001127707.2Link to Protein Sequence:NP_001121179.1Re-query CCDS DB by Nucleotide ID:NM_001127707Re-query CCDS DB by Protein ID:NP_001121179Link to BLAST:NP_001121179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000286.3 418 P01009-1 418 100% 0 0
NP_001002235.1 418 P01009-1 418 100% 0 0
NP_001002236.1 418 P01009-1 418 100% 0 0
NP_001121172.1 418 P01009-1 418 100% 0 0
NP_001121173.1 418 P01009-1 418 100% 0 0
NP_001121174.1 418 P01009-1 418 100% 0 0
NP_001121175.1 418 P01009-1 418 100% 0 0
NP_001121176.1 418 P01009-1 418 100% 0 0
NP_001121177.1 418 P01009-1 418 100% 0 0
NP_001121178.1 418 P01009-1 418 100% 0 0
NP_001121179.1 418 P01009-1 418 100% 0 0

Chromosomal Locations for CCDS 9925.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 94378449 94378640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94379464 94379611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94380871 94381141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 94382592 94383237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGCCGTCTTCTGTCTCGTGGGGCATCCTCCTGCTGGCAGGCCTGTGCTGCCTGGTCCCTGTCTCCCTGG
CTGAGGATCCCCAGGGAGATGCTGCCCAGAAGACAGATACATCCCACCATGATCAGGATCACCCAACCTT
CAACAAGATCACCCCCAACCTGGCTGAGTTCGCCTTCAGCCTATACCGCCAGCTGGCACACCAGTCCAAC
AGCACCAATATCTTCTTCTCCCCAGTGAGCATCGCTACAGCCTTTGCAATGCTCTCCCTGGGGACCAAGG
CTGACACTCACGATGAAATCCTGGAGGGCCTGAATTTCAACCTCACGGAGATTCCGGAGGCTCAGATCCA
TGAAGGCTTCCAGGAACTCCTCCGTACCCTCAACCAGCCAGACAGCCAGCTCCAGCTGACCACCGGCAAT
GGCCTGTTCCTCAGCGAGGGCCTGAAGCTAGTGGATAAGTTTTTGGAGGATGTTAAAAAGTTGTACCACT
CAGAAGCCTTCACTGTCAACTTCGGGGACACCGAAGAGGCCAAGAAACAGATCAACGATTACGTGGAGAA
GGGTACTCAAGGGAAAATTGTGGATTTGGTCAAGGAGCTTGACAGAGACACAGTTTTTGCTCTGGTGAAT
TACATCTTCTTTAAAGGCAAATGGGAGAGACCCTTTGAAGTCAAGGACACCGAGGAAGAGGACTTCCACG
TGGACCAGGTGACCACCGTGAAGGTGCCTATGATGAAGCGTTTAGGCATGTTTAACATCCAGCACTGTAA
GAAGCTGTCCAGCTGGGTGCTGCTGATGAAATACCTGGGCAATGCCACCGCCATCTTCTTCCTGCCTGAT
GAGGGGAAACTACAGCACCTGGAAAATGAACTCACCCACGATATCATCACCAAGTTCCTGGAAAATGAAG
ACAGAAGGTCTGCCAGCTTACATTTACCCAAACTGTCCATTACTGGAACCTATGATCTGAAGAGCGTCCT
GGGTCAACTGGGCATCACTAAGGTCTTCAGCAATGGGGCTGACCTCTCCGGGGTCACAGAGGAGGCACCC
CTGAAGCTCTCCAAGGCCGTGCATAAGGCTGTGCTGACCATCGACGAGAAAGGGACTGAAGCTGCTGGGG
CCATGTTTTTAGAGGCCATACCCATGTCTATCCCCCCCGAGGTCAAGTTCAACAAACCCTTTGTCTTCTT
AATGATTGAACAAAATACCAAGTCTCCCCTCTTCATGGGAAAAGTGGTGAATCCCACCCAAAAATAA

Translation (418 aa):
MPSSVSWGILLLAGLCCLVPVSLAEDPQGDAAQKTDTSHHDQDHPTFNKITPNLAEFAFSLYRQLAHQSN
STNIFFSPVSIATAFAMLSLGTKADTHDEILEGLNFNLTEIPEAQIHEGFQELLRTLNQPDSQLQLTTGN
GLFLSEGLKLVDKFLEDVKKLYHSEAFTVNFGDTEEAKKQINDYVEKGTQGKIVDLVKELDRDTVFALVN
YIFFKGKWERPFEVKDTEEEDFHVDQVTTVKVPMMKRLGMFNIQHCKKLSSWVLLMKYLGNATAIFFLPD
EGKLQHLENELTHDIITKFLENEDRRSASLHLPKLSITGTYDLKSVLGQLGITKVFSNGADLSGVTEEAP
LKLSKAVHKAVLTIDEKGTEAAGAMFLEAIPMSIPPEVKFNKPFVFLMIEQNTKSPLFMGKVVNPTQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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