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Report for CCDS43444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43444.1 Public Homo sapiens 6 PPP1R18 24 110 108 CCDS HistoryNCBI Gene:170954Re-query CCDS DB by CCDS ID:43444.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274853.8 ENSP00000274853.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274853.8Link to Ensembl Protein Viewer:ENSP00000274853.3Re-query CCDS DB by Nucleotide ID:ENST00000274853Re-query CCDS DB by Protein ID:ENSP00000274853
Original member Current member EBI ENST00000399199.7 ENSP00000382150.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399199.7Link to Ensembl Protein Viewer:ENSP00000382150.3Re-query CCDS DB by Nucleotide ID:ENST00000399199Re-query CCDS DB by Protein ID:ENSP00000382150
Original member Current member EBI ENST00000615527.1 ENSP00000480270.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615527.1Link to Ensembl Protein Viewer:ENSP00000480270.1Re-query CCDS DB by Nucleotide ID:ENST00000615527Re-query CCDS DB by Protein ID:ENSP00000480270
Original member Current member NCBI NM_001134870.2 NP_001128342.1 Accepted alive Link to Nucleotide Sequence:NM_001134870.2Link to Protein Sequence:NP_001128342.1Re-query CCDS DB by Nucleotide ID:NM_001134870Re-query CCDS DB by Protein ID:NP_001128342Link to BLAST:NP_001128342.1
Original member Current member NCBI NM_133471.4 NP_597728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133471.4Link to Protein Sequence:NP_597728.1Re-query CCDS DB by Nucleotide ID:NM_133471Re-query CCDS DB by Protein ID:NP_597728Link to BLAST:NP_597728.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128342.1 613 Q6NYC8-1 613 100% 0 0
NP_597728.1 613 Q6NYC8-1 613 100% 0 0

Chromosomal Locations for CCDS 43444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30677269 30677288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30679179 30679389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30684408 30686018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1842 nt):
ATGGCCACCATCCCAGACTGGAAGCTACAGCTGCTAGCCCGGCGCCGGCAGGAGGAGGCGTCCGTTCGAG
GCCGAGAGAAAGCAGAACGGGAGCGCCTGTCCCAGATGCCAGCCTGGAAACGAGGGCTCCTGGAGCGCCG
CCGGGCCAAGCTTGGGCTGTCCCCTGGGGAGCCTAGCCCTGTGCTAGGGACTGTAGAGGCTGGACCTCCA
GACCCGGATGAGTCTGCGGTCCTTCTGGAGGCCATCGGGCCAGTGCACCAGAACCGATTCATCCGGCAGG
AGCGGCAGCAGCAGCAGCAGCAACAACAACGGAGTGAAGAGCTGCTAGCAGAGAGAAAGCCTGGGCCTCT
GGAGGCCCGGGAGCGGAGACCCAGCCCTGGGGAGATGCGGGATCAGAGCCCCAAGGGAAGAGAGTCAAGA
GAAGAGAGACTAAGTCCGAGGGAGACCAGAGAGAGGAGGCTGGGGATAGGGGGAGCCCAAGAGTTGAGCC
TGAGGCCTCTGGAGGCTCGGGACTGGAGGCAAAGCCCAGGAGAGGTGGGAGACAGGAGCTCCCGACTGTC
AGAGGCATGGAAATGGAGGCTGAGTCCTGGAGAAACTCCAGAGCGGAGTCTGAGACTAGCAGAGTCTCGA
GAGCAAAGCCCCAGGAGAAAAGAGGTGGAAAGTAGACTGAGCCCAGGGGAATCTGCCTACCAGAAGTTGG
GCCTGACAGAGGCCCATAAATGGAGACCTGACTCCAGAGAGTCTCAGGAACAGAGTTTGGTACAACTGGA
GGCAACAGAGTGGAGGCTGAGGTCAGGAGAAGAAAGACAAGACTACTCGGAAGAATGTGGGAGAAAAGAA
GAGTGGCCAGTTCCAGGGGTAGCTCCAAAAGAGACTGCAGAGCTGTCCGAGACCCTGACAAGGGAGGCCC
AAGGCAACAGTTCCGCAGGAGTGGAGGCAGCAGAGCAGAGGCCTGTGGAAGATGGCGAGAGGGGCATGAA
GCCAACAGAAGGGTGGAAATGGACCCTGAACTCCGGGAAGGCTCGAGAATGGACACCCAGGGACATAGAG
GCTCAAACTCAGAAACCAGAACCTCCAGAGTCAGCAGAGAAGCTTCTGGAATCTCCCGGTGTGGAGGCTG
GAGAAGGGGAGGCTGAGAAGGAGGAGGCGGGGGCTCAGGGCAGGCCTCTGAGAGCCCTGCAGAACTGCTG
CTCTGTGCCCTCCCCCCTCCCACCAGAGGACGCTGGGACTGGAGGCCTGAGACAGCAGGAAGAGGAAGCA
GTGGAGCTCCAGCCCCCACCACCAGCCCCTCTGTCTCCCCCACCCCCAGCCCCAACTGCCCCCCAACCTC
CTGGGGATCCCCTCATGAGCCGCCTGTTCTATGGGGTGAAGGCAGGGCCAGGGGTGGGGGCCCCCCGCCG
CAGTGGACACACCTTCACCGTCAACCCCCGGCGGTCTGTGCCCCCTGCGACCCCAGCCACCCCAACCTCT
CCAGCCACAGTTGATGCTGCAGTCCCGGGGGCTGGGAAGAAGCGGTACCCAACTGCCGAGGAGATCTTGG
TTCTGGGGGGCTACCTCCGTCTCAGCCGCAGCTGCCTTGCCAAGGGGTCCCCCGAAAGACACCACAAACA
GCTTAAGATCTCCTTCAGCGAGACAGCCCTGGAGACCACGTACCAATACCCCTCCGAGAGTTCGGTACTG
GAGGAGCTGGGCCCGGAGCCTGAGGTCCCCAGTGCCCCCAACCCTCCAGCAGCCCAACCCGACGACGAAG
AGGATGAGGAAGAGCTGCTGCTGCTGCAGCCAGAGCTCCAGGGCGGGCTGCGCACCAAGGCCCTGATTGT
GGATGAGTCCTGCCGGCGGTGA

Translation (613 aa):
MATIPDWKLQLLARRRQEEASVRGREKAERERLSQMPAWKRGLLERRRAKLGLSPGEPSPVLGTVEAGPP
DPDESAVLLEAIGPVHQNRFIRQERQQQQQQQQRSEELLAERKPGPLEARERRPSPGEMRDQSPKGRESR
EERLSPRETRERRLGIGGAQELSLRPLEARDWRQSPGEVGDRSSRLSEAWKWRLSPGETPERSLRLAESR
EQSPRRKEVESRLSPGESAYQKLGLTEAHKWRPDSRESQEQSLVQLEATEWRLRSGEERQDYSEECGRKE
EWPVPGVAPKETAELSETLTREAQGNSSAGVEAAEQRPVEDGERGMKPTEGWKWTLNSGKAREWTPRDIE
AQTQKPEPPESAEKLLESPGVEAGEGEAEKEEAGAQGRPLRALQNCCSVPSPLPPEDAGTGGLRQQEEEA
VELQPPPPAPLSPPPPAPTAPQPPGDPLMSRLFYGVKAGPGVGAPRRSGHTFTVNPRRSVPPATPATPTS
PATVDAAVPGAGKKRYPTAEEILVLGGYLRLSRSCLAKGSPERHHKQLKISFSETALETTYQYPSESSVL
EELGPEPEVPSAPNPPAAQPDDEEDEEELLLLQPELQGGLRTKALIVDESCRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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