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Report for CCDS12491.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12491.1 Public Homo sapiens 19 ZNF565 24 110 108 CCDS HistoryNCBI Gene:147929Re-query CCDS DB by CCDS ID:12491.1Re-query CCDS DB by GeneID:147929See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 12491.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304116.10 ENSP00000306869.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304116.10Link to Ensembl Protein Viewer:ENSP00000306869.5Re-query CCDS DB by Nucleotide ID:ENST00000304116Re-query CCDS DB by Protein ID:ENSP00000306869
Original member Current member EBI ENST00000392173.6 ENSP00000376013.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392173.6Link to Ensembl Protein Viewer:ENSP00000376013.1Re-query CCDS DB by Nucleotide ID:ENST00000392173Re-query CCDS DB by Protein ID:ENSP00000376013
Original member Current member NCBI NM_001042474.2 NP_001035939.1 Accepted alive Link to Nucleotide Sequence:NM_001042474.2Link to Protein Sequence:NP_001035939.1Re-query CCDS DB by Nucleotide ID:NM_001042474Re-query CCDS DB by Protein ID:NP_001035939Link to BLAST:NP_001035939.1
Original member Current member NCBI NM_001366188.1 NP_001353117.1 Accepted alive Link to Nucleotide Sequence:NM_001366188.1Link to Protein Sequence:NP_001353117.1Re-query CCDS DB by Nucleotide ID:NM_001366188Re-query CCDS DB by Protein ID:NP_001353117Link to BLAST:NP_001353117.1
Original member Current member NCBI NM_001366189.1 NP_001353118.1 Accepted alive Link to Nucleotide Sequence:NM_001366189.1Link to Protein Sequence:NP_001353118.1Re-query CCDS DB by Nucleotide ID:NM_001366189Re-query CCDS DB by Protein ID:NP_001353118Link to BLAST:NP_001353118.1
Original member Current member NCBI NM_152477.5 NP_689690.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152477.5Link to Protein Sequence:NP_689690.3Re-query CCDS DB by Nucleotide ID:NM_152477Re-query CCDS DB by Protein ID:NP_689690Link to BLAST:NP_689690.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035939.1 499 Q8N9K5-2 499 100% 0 0
NP_001353117.1 499 Q8N9K5-2 499 100% 0 0
NP_001353118.1 499 Q8N9K5-2 499 100% 0 0
NP_689690.3 499 Q8N9K5-2 499 100% 0 0

Chromosomal Locations for CCDS 12491.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 36182466 36183733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36194233 36194328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36195030 36195156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 36201977 36201985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGGCCCAGGGACTGGTGACATTCAGGGACGTGGCCATAGAGTTCTCTCTGGAAGAATGGAAGTGCCTGG
AACCTGCTCAGAGGGACTTGTACAGGGAGGTGACTCTGGAGAACTTTGGTCACTTGGCCTCACTAGGACT
CTCCATTTCTAAGCCTGATGTCGTCTCCTTATTGGAGCAAGGGAAAGAGCCCTGGATGATTGCAAATGAT
GTGACAGGACCATGGTGCCCAGACTTGGAGTCCAGGTGTGAGAAATTTCTACAAAAAGACATTTTTGAAA
TCGGGGCATTCAACTGGGAGATAATGGAAAGCCTTAAATGCAGTGACCTGGAGGGCTCCGATTTTAGAGC
TGACTGGGAATGCGAAGGCCAGTTTGAGAGACAAGTCAATGAAGAGTGCTATTTTAAGCAAGTGAACGTC
ACCTATGGACATATGCCCGTGTTCCAGCATCACACGTCTCACACTGTACGTCAGAGCAGGGAGACTGGTG
AGAAACTGATGGAATGTCATGAATGTGGGAAAGCATTTAGCCGTGGCTCACACCTTATTCAACATCAGAA
AATTCACACTGGTGAAAAACCCTTTGGATGTAAGGAATGTGGGAAGGCCTTCAGCCGTGCCTCACACCTT
GTTCAGCATCAGAGAATTCACACGGGTGAGAAACCTTATGACTGTAAGGACTGTGGGAAGGCCTTTGGTC
GTACATCAGAACTTATTCTACATCAGAGACTTCATACTGGTGTCAAACCTTATGAATGTAAAGAATGTGG
GAAGACCTTTAGGCAGCATTCACAGCTGATTCTGCATCAAAGAACTCACACAGGCGAGAAACCCTACGTA
TGTAAAGACTGTGGCAAGGCTTTCATTCGTGGCTCCCAACTCACTGTGCATCGGAGAATCCACACAGGGG
CCAGACCCTATGAGTGTAAAGAATGCGGGAAAGCCTTTAGACAGCACTCACAGCTGACTGTACACCAGCG
AATCCACACTGGTGAGAAACCCTACGAGTGTAAGGAATGCGGAAAGGGCTTTATTCACAGCTCAGAAGTT
ACTCGACATCAAAGAATTCATTCTGGGGAGAAACCCTATGAGTGTAAGGAATGTGGGAAGGCCTTCAGAC
AGCACGCACAGCTCACACGACATCAGAGAGTCCATACTGGCGACAGACCCTATGAATGTAAGGACTGCGG
GAAGGCATTTAGTCGTAGCTCATACCTCATTCAACATCAAAGAATTCATACAGGTGACAAACCCTACGAA
TGTAAGGAATGTGGGAAGGCCTTTATTCGTGTTTCACAACTGACTCATCATCAGCGAATTCACACTTGTG
AGAAACCCTATGAATGCAGGGAGTGTGGAATGGCCTTTATTCGTAGTTCACAACTTACCGAACATCAGAG
AATTCATCCTGGTATCAAACCTTACGAATGTAGAGAGTGTGGGCAGGCATTTATTCTTGGCTCACAACTC
ATTGAACACTACAGAATTCATACTGGTTAG

Translation (499 aa):
MAQGLVTFRDVAIEFSLEEWKCLEPAQRDLYREVTLENFGHLASLGLSISKPDVVSLLEQGKEPWMIAND
VTGPWCPDLESRCEKFLQKDIFEIGAFNWEIMESLKCSDLEGSDFRADWECEGQFERQVNEECYFKQVNV
TYGHMPVFQHHTSHTVRQSRETGEKLMECHECGKAFSRGSHLIQHQKIHTGEKPFGCKECGKAFSRASHL
VQHQRIHTGEKPYDCKDCGKAFGRTSELILHQRLHTGVKPYECKECGKTFRQHSQLILHQRTHTGEKPYV
CKDCGKAFIRGSQLTVHRRIHTGARPYECKECGKAFRQHSQLTVHQRIHTGEKPYECKECGKGFIHSSEV
TRHQRIHSGEKPYECKECGKAFRQHAQLTRHQRVHTGDRPYECKDCGKAFSRSSYLIQHQRIHTGDKPYE
CKECGKAFIRVSQLTHHQRIHTCEKPYECRECGMAFIRSSQLTEHQRIHPGIKPYECRECGQAFILGSQL
IEHYRIHTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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