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Report for CCDS28919.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28919.1 Public Mus musculus 17 Acer1 23 108 98 CCDS HistoryNCBI Gene:171168Re-query CCDS DB by CCDS ID:28919.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28919.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056113.4 ENSMUSP00000062037.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056113.4Link to Ensembl Protein Viewer:ENSMUSP00000062037.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056113Re-query CCDS DB by Protein ID:ENSMUSP00000062037
Original member Current member NCBI NM_175731.4 NP_783858.1 Accepted alive Link to Nucleotide Sequence:NM_175731.4Link to Protein Sequence:NP_783858.1Re-query CCDS DB by Nucleotide ID:NM_175731Re-query CCDS DB by Protein ID:NP_783858Link to BLAST:NP_783858.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783858.1 273 Q8R4X1 273 100% 0 0

Chromosomal Locations for CCDS 28919.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56955079 56955247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56955496 56955633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56958313 56958450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56958897 56959038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56959125 56959239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56981989 56982108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGCATGTACCGGGCACCAGAGCAAAGATGTCCAGCATCTTTGCCTATCAGAGTTCTGAGGTGGATTGGT
GTGAGAGTAATTTCCAGCACTCAGAGTTGGTGGCCGAGTTCTACAATACGTTCAGCAATGTGTTCTTCCT
CATCTTTGGACCCCTCATGATGTTCCTCATGCATCCGTATGCCCAGAAGCGTACCCGGTGTTTCTATGGA
GTGTCAGTCCTCTTCATGCTCATAGGTCTGTTCTCCATGTATTTCCACATGACACTCAGCTTTCTGGGAC
AGCTGCTGGATGAGATCTCCATCCTGTGGTTGTTGGCCAGTGGATACAGTGTGTGGCTGCCCCGTTGCTA
TTTTCCCAAGTTCGTCAAGGGGAACAGGTTCTACTTCAGCTGCCTGGTAACTATAACCACTATTATCAGC
ACCTTCTTGACGTTCGTGAAGCCCACAGTCAATGCATATGCTCTCAACAGCATCGCCATCCACATCCTCT
ACATTGTGCGCACAGAGTACAAGAAGATTAGGGATGATGATCTTCGGCATCTGATTGCGGTTTCTGTGGT
CTTATGGGCCGCTGCACTGACCAGCTGGATCAGTGACCGTGTACTTTGCAGCTTCTGGCAGCGGATTCAC
TTCTACTACCTGCACAGCATTTGGCACGTCCTCATAAGCATCACATTTCCTTATGGTATCGTGACCATGG
CCCTGGTGGATGCAAAGTATGAGATGCCAGATAAAACCCTCAAAGTCCACTACTGGCCCCGGGACAGCTG
GGTCATCGGGCTACCCTATGTGGAGATCCAGGAGAATGACAAGAACTGCTGA

Translation (273 aa):
MHVPGTRAKMSSIFAYQSSEVDWCESNFQHSELVAEFYNTFSNVFFLIFGPLMMFLMHPYAQKRTRCFYG
VSVLFMLIGLFSMYFHMTLSFLGQLLDEISILWLLASGYSVWLPRCYFPKFVKGNRFYFSCLVTITTIIS
TFLTFVKPTVNAYALNSIAIHILYIVRTEYKKIRDDDLRHLIAVSVVLWAAALTSWISDRVLCSFWQRIH
FYYLHSIWHVLISITFPYGIVTMALVDAKYEMPDKTLKVHYWPRDSWVIGLPYVEIQENDKNC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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